cluster # 9342

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Anopheles gambiae
cluster # 9342 cluster # 9342 Sequences # 16 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9342#0 length = 1408 sequences # 9
consensus_9342#1 length = 967 sequences # 5

consensus_9342#2 length = 601 sequences # 1
consensus_9342#3 length = 346 sequences # 1

consensusID : consensus_9342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1408
fasta sequence

                              [CGTTCGTCGGTGCGTCCATCGCGCACACGATCGTTTTCATGAAGGGGGCGGCCGAGAGCGACGCATAGTTTTGCCATTTGCGCGACGTCGTGCCGTCCTTGTAGTCCGCGATGCCCTTCACCAGGATGAAGCTGTCCCGGCAGTAGCCGACGATGCTGTCCAGCACCGAGTTCATCTCGCTGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGCACTGTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCGGCCCACCGCCGCTCGCGTCCGTATCGTCGCCCCCGTCGCCCTCCCCGCTCGGCTGGGCGATCGGGTGCGCCACCTCGATCACGTTCTTGTTGCCGATGTTCATGTACAGCTTGGCCGTGTTGGGGGCCGGCCGGGCAAAGTCATGCTCGGCGTGACCGCCCCGCCCGCTCAGCTGCTGCAGGCCCTCCTGCACGTACTGCAGCCACGGTTTTTTGCCGTCGTCGTTCTGCACGAGCGTGCGCCCGATCGCCTGCAGCCCATCGTCCGCCGGGTAGTAGCGCTTCACCTCGCTCTGGCCGCCGCTGTACACGTAGCAGTACGGTTTCGGCCCGTTGCCGTTGGTGAGGGCCGGCTCGTGGGCGGCGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGCGGGTCGTCGTGTTGCCGGCCGCCGT-CATCGCTTCGCGCGTGCTGCCCACCGACGGGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTACGGTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCTCGCAGTACTGCG-CGGTGATGATGGCAATGGTGGGCTGCTTGTTCGACGCGATCGTCGGCATCTGCTT-GACGA-TTTTGATGGCCTG-GTCGTCATGGTGAATG-CGAGTGAACGCGTTGTACTCCATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGCGAGCACCTCCTCCTCCTCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGGGGTTCGGGTAGGCCTGCTCGATCAGTTCCAGTATTTTCTCCGGCGTCAGCGGCACCACCTCAAACTGTTCGTCCTCGAACGACAAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACGGCCTGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGACGTAGTCCTCNCCTCGTGGCGATTCTTG]

[+] EMBL CNS08YEF             [CGTTCGTCGGTGCGTCCATCGCGCACACGATCGTTTTCATGAAGGGGGCGGCCGAGAGCGACGCATAGTTTTGCCATTTGCGCGACGTCGTGCCGTCCTTGTAGTCCGCGATGCCCTTCACCAGGATGAAGCTGTCCCGGCAGTAGCCGACGATGCTGTCCAGCACCGAGTTCATCTCGCTGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGCACTGTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCGGCCCACCGCCGCTCGCGTCCGTATCGTCGCCCCCGTCGCCCTCCCCGCTCGGCTGGGCGATCGGGTGCACC CCTCGATCACGTTCTTGTTGCGGATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AGA284643            [                                                                                            CCGTCCTTGTAGTCCGCGATGCCCTTCACCAGGATGAAGCTGTCCCGGCAGTTGCCGACGATGCTGTCCAGCACCGAGTTCATCTCGCTGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGCACTGTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCGGNCCACCGCCGCTCGCGTCCGTATCGTCGCCCCCGTCGCCCTCCCCGCTCGGCTGGGCGATCGGGTGCGCCACCTCGATCACGTTCTTGTTGCCGATGTTCATGTACAGCTTGGCCGTGTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AGA283351            [                                                                                                                                                                                                                       TCGGTGCGCGCACTGTCGGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCGGCCCACCGCCGCTCGCGTCCGTATCGTCGCCCCCGTCGCCCTCCCCGCTCGGCTGGGCGATCGGGTGCGCCACCTCGATCACGTTCTTGTTGCCGATGTTCATGTACAGCTTGTCCGTGTTGGGGGCCGGCCGGGCAAAGTCATGCTCGGCGTGACCGCCCCGCCCGCTCAGCTGCTGCAGGCCCTCCTGCACGTACTGCAGCCACGGTTTTTTGCCGTCGTCGTTCTGCACGAGCGTGCGCCCGATCGCCTGCAGCCCATCGTCCGCCGGGTAGTAGCGCTTCACCTCGCTCTGGCCGCCGCTGTACACGTAGCAGTACGGTTTCGGCCCGTTGCCGTTGGTGAGGGCCGGCTCGTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CNS08YEE             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGTACACGTAGCAGTACGGTTTCGGCCCGTTGCCGTTGGTGAGGGCCGGCTCGTGGGCGGCGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGT GGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGCGGGTCGTCGTGTTGCCGGCCGCCGTGCAT  CTTCGCGCGTGCTGCCCACCGACGGGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCG CTACGGTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCTCGCAGTACTGCG CGGTGATGATGGCAGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL BX603120             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTTGCCGTTGGTGAGGGCCGGCTCGTGGGCGGCGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGCGGGTCGTCGTGTTGCCGGCCGCCGT CATCGCTTCGCGCGTGCTGCCCACCGACGGGAGCTTCGTGCTGACGATCCGGTGCGCCCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AGA281624            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGCGGGTCGTCGTGTTGCCGGCCGCCGT CATCGCTTCGCGCGTGCTGCCCACCGACGGGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTACGGTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCTCGCAGTACTGCGCCGGTGATGATGGCAATGGTGGGCTGCTTGTTCGACGCGATCGTCGGCATCTGCTT GACGA TTTT ATGGCCTG GTCGTCATGGTGAATG CGAGTGAACGCGTTGTACTCCATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGCGAGCACCTCCTCCTCCTCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGGGGTTCGGGTAGGCCTGCTCGATCAGTTCCAGTATTTTCTCCGGCGTCAGGGGMACCACCTCAAACTGTTCGTCCTCGAACGACAAAGGTCTCGATGGTGGTG                                                                                                                            ]
[+] EMBL AGA280429            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGCGGGTCGTCGTGTT       GCCGT CATCGCTTCGCGCGTGCTGCCCACCGACGGGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTACGGTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCTCGCAGTACTGCG CGGTGATGATGGCAATGGTGGGCTGCTTGTTCGACGCGATCGTCGGCATCTGCTT GACGA TTTTGATGGCCTG GTCGTCATGGTGAATG CGAGTGAACGCGTTGTACTCCATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGGGAGCACCTCCTCCTCCTCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGG                                                                                                                                                                                                                                  ]
[-] EMBL BX619061             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCGGGTCGTCGTGTTGCCGGCCGCCGT CATCGCTTCGCGCGTGCTGCCCACCGACGGGAGATTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTACGGTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCTCGCAGTACTGCG CGGTGATGATGGCAATGGTGGGCTGCTTGTTCGACGCGATCGTCGGCATCTGCTT GACGA TTTTGATGGCCTG GTCGTCATGGTGAATG CGAGTGAACGCGTTGTACTCCATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGCGAGCACCTCCTCCTCCTCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGGGGTTCGGGTAGGCCTGCTCGATCAGTTCCAGTATTTTCTCCGGCGTCAGCGGCACCACCTCAAACTGTTCGTCCTCGAACGACAAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATT                                                                                                        ]
[-] EMBL BX468963             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCATCTGCTTCGACGACTTTTGATGNCCTGNGTCGTCATGGTGAATGCCGAGTGAACGCGTTGTACTCCATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGCGAGCACCTCCTCCTCCTCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGGGGTTCGGGTAGGCCTGCTCGATCAGTTCCAGTATTTTCTCCGGCGTCAGCGGCACCACCTCAAACTGTTCGTCCTCGAACGACAAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACGGCCTGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGACGTAGTCCTCNCCTCGTGGCGATTCTTG]




>consensus_9342#0
CGTTCGTCGGTGCGTCCATCGCGCACACGATCGTTTTCATGAAGGGGGCGGCCGAGAGCG
ACGCATAGTTTTGCCATTTGCGCGACGTCGTGCCGTCCTTGTAGTCCGCGATGCCCTTCA
CCAGGATGAAGCTGTCCCGGCAGTAGCCGACGATGCTGTCCAGCACCGAGTTCATCTCGC
TGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGCACTGTCCGACCGGA
CCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCGGCC
CACCGCCGCTCGCGTCCGTATCGTCGCCCCCGTCGCCCTCCCCGCTCGGCTGGGCGATCG
GGTGCGCCACCTCGATCACGTTCTTGTTGCCGATGTTCATGTACAGCTTGGCCGTGTTGG
GGGCCGGCCGGGCAAAGTCATGCTCGGCGTGACCGCCCCGCCCGCTCAGCTGCTGCAGGC
CCTCCTGCACGTACTGCAGCCACGGTTTTTTGCCGTCGTCGTTCTGCACGAGCGTGCGCC
CGATCGCCTGCAGCCCATCGTCCGCCGGGTAGTAGCGCTTCACCTCGCTCTGGCCGCCGC
TGTACACGTAGCAGTACGGTTTCGGCCCGTTGCCGTTGGTGAGGGCCGGCTCGTGGGCGG
CGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGA
TGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGC
GGGTCGTCGTGTTGCCGGCCGCCGTCATCGCTTCGCGCGTGCTGCCCACCGACGGGAGCT
TCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTA
CGGTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCT
CGCAGTACTGCGCGGTGATGATGGCAATGGTGGGCTGCTTGTTCGACGCGATCGTCGGCA
TCTGCTTGACGATTTTGATGGCCTGGTCGTCATGGTGAATGCGAGTGAACGCGTTGTACT
CCATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGCGAGCACCTCCTCCT
CCTCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGGGGTTCGGGTAGGCCTGCT
CGATCAGTTCCAGTATTTTCTCCGGCGTCAGCGGCACCACCTCAAACTGTTCGTCCTCGA
ACGACAAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGA
CGGCCTGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGA
CGTAGTCCTCNCCTCGTGGCGATTCTTG

consensusID : consensus_9342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 967
fasta sequence

                              [TTATTGTTTCGGTCGAGCTTGTGACAGTTGCCGTAGCAAACGATCACGTGCCCGGGGCGTGAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACGGCCTGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGACGTAGTCCCTCGGAAACTCTTTCGGGCTGACGAGCTCGCGGAAGAAGTCCTGCGCTACCTGCGCCTGCACGTTCTCCGACGTCAGCCACGGCCGGAACCAGAACTTGATGCGGCGAGATTCCTGCGAGTGCTGGCCACTGTTGGCGCTGACCAGGAAGACGCGGAACTCGAGACTGAGCTGGGCCGGTTCGCGCTGCCGATTCGATTGTTCTTCAGCCGTTTTGTTGATGATGATGCCCCGATGGTCCCCACCGGCCACGTGTGTCCGTTCGC-CGACCGACTGGATGAGCTTCCGCTCGATCAGCAGCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGCGTTTCGGAAGGAACTGCTGGCATGCCCGGGTCGGCACCGTGCTGCTGCTGCTGCTGAGGATGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTCGGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCACACTCTTTTCTCTATATTTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCTGAAGAGAGGTCCAGGAAAATTGTAGACAAAACACACACACACACACACACCGCAAGCAAAGCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTACGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGACTTGTAACGGACG-CGGCCGGGTGGGCGG]

[-] EMBL BM614727             [TTATTGTTTCGGTCGAGCTTGTGACAGTTGCCGTAGCAAACGATCACGTGCCCGGGGCGTGAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACGGCCTGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGACGTAGTCCCTCGGAAACTCTTTCGGGCTGACGAGCTCGCGGAAGAAGTCCTGCGCTACCTGCGCCTGCACGTTCTCCGACGTCAGCCACGGCCGGAACCAGAACTTGATGCGGCGAGATTCCTGCGAGTGCTGGCCACTGTTGGCGCTGACCAGGAAGACGCGGAACTCGAGACTGAGCTGGGCCGGTTCGCGCTGCCGATTCGATTGTTCTTCAGCCGTTTTGTTGATGATGATGCCCCGATGGTCCCCACCGGCC CACGCGTCCGCCCACGCGTCCGcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BM607813             [                                                                                                                                                                                                                                                                                                CGAGATTCCTGCGAGTGCTGGCCACTGTTGGCGCTGACCAGGAAGACGCGGAACTCGAGACTGAGCTGGGCCGGTTCGCGCTGCCGATTCGATTGTTCTTCAGCCGTTTTGTTGATGATGATGCCCCGATGGTCCCCACCGGCCACGTGTGTCCGTTCGC CGACCGACTGGATGAGCTTCCGCTCGATCAGCAGCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGCGTTTCGGAAGGAACTGCTGGCATGCCCGGGTCGGCACCGTGCTGCTGCTGCTGCTGAGGATGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTCGGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCACACTCTTTTCTCTATATTTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCTGAAGAGAGGTCCAGGAAAATTGTAGACAAAACACACACACACACACACACCGCAAGCAAAGCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTACGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGACTTGTAACGGACG CACCCGG        ]
[-] EMBL BM590355             [                                                                                                                                                                                                                                                                                                           CGAGTGCTGGCCACTGTTGGCGCTGACCAGGAAGACGCGGAACTCGAGACTGAGCTGGGCCGGTTCGCGCTGCCGATTCGATTGTTCTTCAGCCGTTTTGTTGATGATGATGCCCCGATGGTCCCCACCGGCCACGTGTGTCCGTTCGC CGACCGACTGGATGAGCTTCCGCTCGATCAGCAGCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGCGTTTCGGAAGGAACTGCTGGCATGCCCGGGTCGGCACCGTGCTGCTGCTGCTGCTGAGGATGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTCGGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCACACTCTTTTCTCTATATCTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCTGAAGAGAGCTCCAGGAAAATTGTAGACAAA      ACACACACACACACCGCAAGCAAAGCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTACGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGACTTGTAACGGACGCCGGACGCGTGGGCGG]
[-] EMBL BM607024             [                                                                                                                                                                                                                                                                                                                                                                                            TTGTTCTTCAGCCGTTTTGTTGATGATGATGCCCCGATGGTCCCCACCGGCCACGTGTGTCCGTTCGC CGACCGACTGGATGAGCTTCCGCTCGATCAGCAGCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGCGTTTCGGAAGGAACTGATGGCATGCCCGGGTCGGCACCGTGCTGCTGCTGCTGCTGAGGATGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTCGGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCACACTCTTTTCTCTATATTTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCTGAAGAGAGGTCCAGGAAAATTGTAGACAAAACACACACACACACACACACCGCAAGCAAAGCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTACGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGACTTGTAACGGACG CGG            ]
[-] EMBL BM591079             [                                                                                                                                                                                                                                                                                                                                                                                                                                           CGGCCACGTGTGTCCGTTCGC CGACCGACTGGATGAGCTTCCGCTCGATCAGCAGCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGCGTTTCGGAAGGAACTGCTGGCATGCCCGGGTCGGCACCGTGCTGCTGCTGCTGCTGAGGATGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTCGGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCACACTCTTTTCTCTATATCTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCTGAAGAGAGCTCCAGGAAAATTGTAGACAAA      ACACACACACACACCGCAAGCAAAGCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTACGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGcgg                           ]




>consensus_9342#1
TTATTGTTTCGGTCGAGCTTGTGACAGTTGCCGTAGCAAACGATCACGTGCCCGGGGCGT
GAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACGGCC
TGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGACGTAG
TCCCTCGGAAACTCTTTCGGGCTGACGAGCTCGCGGAAGAAGTCCTGCGCTACCTGCGCC
TGCACGTTCTCCGACGTCAGCCACGGCCGGAACCAGAACTTGATGCGGCGAGATTCCTGC
GAGTGCTGGCCACTGTTGGCGCTGACCAGGAAGACGCGGAACTCGAGACTGAGCTGGGCC
GGTTCGCGCTGCCGATTCGATTGTTCTTCAGCCGTTTTGTTGATGATGATGCCCCGATGG
TCCCCACCGGCCACGTGTGTCCGTTCGCCGACCGACTGGATGAGCTTCCGCTCGATCAGC
AGCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGC
GTTTCGGAAGGAACTGCTGGCATGCCCGGGTCGGCACCGTGCTGCTGCTGCTGCTGAGGA
TGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTC
GGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCAC
ACTCTTTTCTCTATATTTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCT
GAAGAGAGGTCCAGGAAAATTGTAGACAAAACACACACACACACACACACCGCAAGCAAA
GCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTA
CGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGACTTGTAACGGACGCGGCCGGG
TGGGCGG

consensusID : consensus_9342#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [TGGGCGGCGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGTAGGCGGGTCGTCGTGTTGCCGGCCGCCGTCATCGCTTCGCGCGTGCTGCCCACCGACAAGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTGTGAAACATTGAGGATGGAGACAGTGAGGGGGAGAGTAGCGAGATAGAGCAAAAAAGAACCAAATTAGTTGTGTTACAAGGATTTTAAACGAAGGCAGTTTTGGTGCTATTATTTAATTCCATCACCTCTTAAATTCACAAACAAAACTAACAAACACATAAAGCAACCAAAATGCACAGTGGGTTCTGACGGCCTTTTACAACGGCTGTTTTCAATCACATGTTCGATATCAATAACTAGGATTAGAGCTACTAATGCGAGGACTACATGAAGCGATGCGACATGGAATGTCTAATTCATCCTCGAAACTCGTAATGTTTTAATTTTATCATTTCAAAGCCTCTCAAATCAACC]

[-] EMBL BX602943             [TGGGCGGCGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGTAGGCGGGTCGTCGTGTTGCCGGCCGCCGTCATCGCTTCGCGCGTGCTGCCCACCGACAAGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTGTGAAACATTGAGGATGGAGACAGTGAGGGGGAGAGTAGCGAGATAGAGCAAAAAAGAACCAAATTAGTTGTGTTACAAGGATTTTAAACGAAGGCAGTTTTGGTGCTATTATTTAATTCCATCACCTCTTAAATTCACAAACAAAACTAACAAACACATAAAGCAACCAAAATGCACAGTGGGTTCTGACGGCCTTTTACAACGGCTGTTTTCAATCACATGTTCGATATCAATAACTAGGATTAGAGCTACTAATGCGAGGACTACATGAAGCGATGCGACATGGAATGTCTAATTCATCCTCGAAACTCGTAATGTTTTAATTTTATCATTTCAAAGCCTCTCAAATCAACC]




>consensus_9342#2
TGGGCGGCGGCCGCAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAG
TGGGGGATGCCGCCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCG
AGTAGGCGGGTCGTCGTGTTGCCGGCCGCCGTCATCGCTTCGCGCGTGCTGCCCACCGAC
AAGAGCTTCGTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGAT
TCGCCTGTGAAACATTGAGGATGGAGACAGTGAGGGGGAGAGTAGCGAGATAGAGCAAAA
AAGAACCAAATTAGTTGTGTTACAAGGATTTTAAACGAAGGCAGTTTTGGTGCTATTATT
TAATTCCATCACCTCTTAAATTCACAAACAAAACTAACAAACACATAAAGCAACCAAAAT
GCACAGTGGGTTCTGACGGCCTTTTACAACGGCTGTTTTCAATCACATGTTCGATATCAA
TAACTAGGATTAGAGCTACTAATGCGAGGACTACATGAAGCGATGCGACATGGAATGTCT
AATTCATCCTCGAAACTCGTAATGTTTTAATTTTATCATTTCAAAGCCTCTCAAATCAAC
C

consensusID : consensus_9342#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [GAGTTCATCGTCGCTGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGCACTGTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCAGGCCACACCGCCAGCATCGCGTCCAGTATCGTCGCCCCACGTCGCCACTCCCCGCTCGGCTGGGCGATCGGGTGCAGCCACCTCGATCACGTTCTTGTTGCCGATGTTCATGTACAGCTTGTCCGTGTTGGGGGCCGGCCGGGCAAAGTCAATTTGGCCTCCCGGCGTGACCGCCCGCCGCTCAGCTGCTGCAGCCCTCCTGAACTCGGGAATTC]

[-] EMBL AL931817             [GAGTTCATCGTCGCTGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGCACTGTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGTGCGGTACCAGGCCACACCGCCAGCATCGCGTCCAGTATCGTCGCCCCACGTCGCCACTCCCCGCTCGGCTGGGCGATCGGGTGCAGCCACCTCGATCACGTTCTTGTTGCCGATGTTCATGTACAGCTTGTCCGTGTTGGGGGCCGGCCGGGCAAAGTCAATTTGGCCTCCCGGCGTGACCGCCCGCCGCTCAGCTGCTGCAGCCCTCCTGAACTCGGGAATTC]




>consensus_9342#3
GAGTTCATCGTCGCTGTCGGTCGCGAGCAGCTGGTACGCCTGGGCGTACTCGGTGCGCGC
ACTGTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTG
GTGCGGTACCAGGCCACACCGCCAGCATCGCGTCCAGTATCGTCGCCCCACGTCGCCACT
CCCCGCTCGGCTGGGCGATCGGGTGCAGCCACCTCGATCACGTTCTTGTTGCCGATGTTC
ATGTACAGCTTGTCCGTGTTGGGGGCCGGCCGGGCAAAGTCAATTTGGCCTCCCGGCGTG
ACCGCCCGCCGCTCAGCTGCTGCAGCCCTCCTGAACTCGGGAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9342#0      CGTTCGTCGGTGCGTCCATCGCGCACACGATCGTTTTCATGAAGGGGGCGGCCGAGAGCG 60
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ------------------------------------------------------------
                                                                                  

consensus_9342#0      ACGCATAGTTTTGCCATTTGCGCGACGTCGTGCCGTCCTTGTAGTCCGCGATGCCCTTCA 120
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      -----------------------------------------------TTATTGTTTCGGT 13
                                                                                  

consensus_9342#0      CCAGGATGAAGCTGTCCCGGCAGTAGCCGACGATGCTGTCCAGCACCGAGTTCATC-TCG 179
consensus_9342#3      -----------------------------------------------GAGTTCATCGTCG 13
consensus_9342#2      ---------------------------------TGGGCGGCGGCCGCAATCACCACGTCG 27
consensus_9342#1      CGAGCTTGTGACAGTTGCCGTAGCAAACGATCACGTGCCCGGGGCGTGAAGGTCTCGATG 73
                                                                      *      *   *

consensus_9342#0      CTGTCGGTCGCGAGCAG-CTGGTACGCCTGG-GCGTACTCGGTGC-GCGCACT------- 229
consensus_9342#3      CTGTCGGTCGCGAGCAG-CTGGTACGCCTGG-GCGTACTCGGTGC-GCGCACT------- 63
consensus_9342#2      CCGAGCCGCACGTGCCG-CCGGTAGTCGGTG-TAGTGGGGGATGCCGCCCGCC------- 78
consensus_9342#1      GTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACGGCCTGTATCTCGTTGT 133
                        *       **      *   **  *   *   *     *  *                

consensus_9342#0      -GTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGT 288
consensus_9342#3      -GTCCGACCGGACCAGCTCGTAGCCGGAGCCGATCGGGCCGGCATGCAGCCGGGTCTGGT 122
consensus_9342#2      -ACCCCGACG-ATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGTAGGCGGGTC-GTC 135
consensus_9342#1      AGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGAC--GTAGTCCCTCGGAAA 191
                         **    * *  * *     *              *  * *  * ** *         

consensus_9342#0      GCGGTACCGGCCCAC--CGCCGC--T-CGCGTCC-GT--ATCGTC----GCCCC-CGTCG 335
consensus_9342#3      GCGGTACCAGGCCACACCGCCAGCAT-CGCGTCCAGT--ATCGTC----GCCCCACGTCG 175
consensus_9342#2      GTGTTGCCGGCCGCCGTCATCGCTTCGCGCGTGCTGCCCACCGACAAGAGCTTCGTGCTG 195
consensus_9342#1      CTCTTTCGGGCTGACGAGCTCGCGGAAGAAGTCCTGC--GCTACCTGCGCCTGCACGTTC 249
                          * *  *    *     *         ** * *        *     *  *  *   

consensus_9342#0      CC-CTCCC---CGCTCGGCTG--GGCG--ATCGGGTGC--------GCCACCTCGATCAC 379
consensus_9342#3      CCACTCCC---CGCTCGGCTG--GGCG--ATCGGGTGCA-------GCCACCTCGATCAC 221
consensus_9342#2      ACGATCCGGTGCGCCCCAATGTTGCCG--AGCGTGTACACGTTCGATTCGCCTGTGAAAC 253
consensus_9342#1      TCCGACGTCAGC-CACGGCCGGAACCAGAACTTGATGCGGCGAGATTCCTGCGAGTGCTG 308
                       *   *     * * *    *    *   *     * *          *  *        

consensus_9342#0      GTTCTTGTTGCCGATGTTCATGTACAGCTTGGCCGTGTTGGGGGCCGGCCGGGCAAAGTC 439
consensus_9342#3      GTTCTTGTTGCCGATGTTCATGTACAGCTTGTCCGTGTTGGGGGCCGGCCGGGCAAAGTC 281
consensus_9342#2      ATTGAGGATGGAGACAGTGAGGGGGAGAGTAGC-GAGATAGAGCAAAAAAGAACCAAATT 312
consensus_9342#1      GCCACTGTTGGCGCTGACCAGGAAGAC----GCGGAACTCGAGACTGAGCTGGGCCGGTT 364
                            * **  *      * *   *      * *   * * *               * 

consensus_9342#0      A-------TGCTCGGCGTGACCGCCCCGCCCGCTCAGCTGCTGCAGGCC--CTCCTGCAC 490
consensus_9342#3      AATTTGGCCTCCCGGCGTGACCGCCCG--CCGCTCAGCTGCTGCAG-CC--CTCCTGAAC 336
consensus_9342#2      AGTTGTGTTACAAGGATTTTAAACGAAGGCAGTTTTGGTGCTATTATTTAATTCCATCAC 372
consensus_9342#1      CGCGCTGCCGATTCGATTGTTCTTCAG--CCGTTTTGTTGATGATGATGC-CCCGATGGT 421
                                    *  *           * * *  * ** *           *      

consensus_9342#0      GTACTGCAGCCACGGTTTTTTGC-CGTCGTCGTTCTGCACGAGCGTGCGCCCGATCGCCT 549
consensus_9342#3      -TCGGGAATTC------------------------------------------------- 346
consensus_9342#2      CTCTTAAATTCACAAACAAAACT-AACAAACACATAAAGCAACCAAAATGCACAGTGGGT 431
consensus_9342#1      CCCCACCGGCCACGTGTGTCCGTTCGCCGACCGACTGGATGAGCTTCCGCTCGATCAGCA 481
                                *                                                 

consensus_9342#0      GCAGCCCAT---CGTCCGCCGGGTAGTAGCGCTTCACCTCGCTCTGGCCGCCGCTGTACA 606
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      TCTGACGGC---CTTTTACAACGGCTGTTTTCAATCACATGTTCGATATCAATAACTAGG 488
consensus_9342#1      GCACCGTGGAGGTGTTCGTCTTGCCCAGCGGTGTCATCACGACCTGCTCCTCGTCGGGCG 541
                                                                                  

consensus_9342#0      CGTAGCAGTACGGTTTCGGCCCGTTGCCGTTGGTGAGGGCCGGCTCGTGGGCGGCGGCCG 666
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ATTAGAGCTACTAATGCGAGGACTACATGAAGCGATGCGACATGGAATGTCTAATTCATC 548
consensus_9342#1      TTTCGGAAGGAACTGCTGGCATGCCCGGGTCGGCACCGTGCTGCTGCTG-CTGCTGAGGA 600
                                                                                  

consensus_9342#0      CAATCACCACGTCGCCGAGCCGCACGTGCCGCCGGTAGTCGGTGTAGTGGGG-GATGCCG 725
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      CTCGAAACTCGTAATGTTTTAATTTTATCATTTCAAAGCCTCTCAAATCAAC-C------ 601
consensus_9342#1      TGTCGCTCCGGTTTCGGGGGTGTCGGTGGCGGTGGAGGTCGCTCCAACCGCTTCACCGTC 660
                                                                                  

consensus_9342#0      CCCGCCACCCCGACGATGAACACGTAGTCCACCTTCTGGAAGGTGCCGAGCAGGCGGGTC 785
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      GGGGACATCATGATTGTGTGTCGTGGAACTTCTTACGGCTTGCTTCCTTAACTACCTCAC 720
                                                                                  

consensus_9342#0      GTCGTGTTGCCGGCCGCCGTCATCGCTTCGCGCGTGCTGCCCACCGA---CGGGAGCTTC 842
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ACTCTTTTCTCTATATTTCCCTCCTTTTCGGTTGTTTTGTCTATAAAGCCCCCAAAACCT 780
                                                                                  

consensus_9342#0      GTGCTGACGATCCGGTGCGCCCCAATGTTGCCGAGCGTGTACACGTTCGATTCGCCTACG 902
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      GAAGAGAGGTCCAGGAAAATTGTAGACAAAACACACACACACACACACACCGCAAGCAAA 840
                                                                                  

consensus_9342#0      GTGGTGTACCGCACGAACGTTTCCTTGTTCTCGAGCATGGCGTCCACCGCGAGCTTCTCG 962
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      GCACTGCGAAACACTGCCGGTGTAGTTTGTTTGGATTTTACGCGTGTACCGAAACGTGTA 900
                                                                                  

consensus_9342#0      CAGTACTGCGCGGTGATGATGGCAATGGTGGGCTGCTTGTTCGACGCGATCGTCGGCATC 1022
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      CGGCTTCGCGCACCTTCGAGAGCGGACGCTGCCTTTCGACTTGTAACGGACGCGGCCGGG 960
                                                                                  

consensus_9342#0      TGCTTGACGATTTTGATGGCCTGGTCGTCATGGTGAATGCGAGTGAACGCGTTGTACTCC 1082
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      TGGGCGG----------------------------------------------------- 967
                                                                                  

consensus_9342#0      ATCGATTTAATCAGGCCGCGCTCCTTCAGCACCAGCATGATGGCGAGCACCTCCTCCTCC 1142
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ------------------------------------------------------------
                                                                                  

consensus_9342#0      TCCCAACCGTGGTCCTTTGCCAGGTCCTCCGGTGCGATGGGGTTCGGGTAGGCCTGCTCG 1202
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ------------------------------------------------------------
                                                                                  

consensus_9342#0      ATCAGTTCCAGTATTTTCTCCGGCGTCAGCGGCACCACCTCAAACTGTTCGTCCTCGAAC 1262
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ------------------------------------------------------------
                                                                                  

consensus_9342#0      GACAAAGGTCTCGATGGTGGTGCGGACGTTTGCTCCAATATTCGCAGCTCGATCTCGACG 1322
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ------------------------------------------------------------
                                                                                  

consensus_9342#0      GCCTGTATCTCGTTGTAGCCCTTCTGGAGCAGCTTCATGATCTTCTTGATAAAGCCGACG 1382
consensus_9342#3      ------------------------------------------------------------
consensus_9342#2      ------------------------------------------------------------
consensus_9342#1      ------------------------------------------------------------
                                                                                  

consensus_9342#0      TAGTCCTCNCCTCGTGGCGATTCTTG 1408
consensus_9342#3      --------------------------
consensus_9342#2      --------------------------
consensus_9342#1      --------------------------