cluster # 945

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Anopheles gambiae
cluster # 945 cluster # 945 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_945#0 length = 663 sequences # 1

consensus_945#1 length = 374 sequences # 1

consensusID : consensus_945#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGGTTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGTGGTGGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCAAGA]

[+] EMBL BM592567             [CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGGTTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGTGGTGGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCAAGA]




>consensus_945#0
CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGG
TTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTT
CCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGT
GGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAA
CGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTT
CGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTG
CGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCG
CGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGTGGT
GGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGAT
GATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCT
GGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCA
AGA

consensusID : consensus_945#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [GGTGATCGCCGCGCTGAAGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTACCCGAAAAAGGGGGGCTACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGCGATCAGTCCGGAGTGGGCGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAAGCTGATCCAGGAACTGAACCGTCCGGGACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGAACTGCACAACGACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGAAAGGAACTCTAACTCGAACGAAACCATCTCGAACGAAAAGGAAGCAAAGGAGGCGAACTAGGAGCCGCGGAAGC]

[+] EMBL BX610284             [GGTGATCGCCGCGCTGAAGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTACCCGAAAAAGGGGGGCTACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGCGATCAGTCCGGAGTGGGCGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAAGCTGATCCAGGAACTGAACCGTCCGGGACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGAACTGCACAACGACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGAAAGGAACTCTAACTCGAACGAAACCATCTCGAACGAAAAGGAAGCAAAGGAGGCGAACTAGGAGCCGCGGAAGC]




>consensus_945#1
GGTGATCGCCGCGCTGAAGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTA
CCCGAAAAAGGGGGGCTACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGC
GATCAGTCCGGAGTGGGCGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAA
GCTGATCCAGGAACTGAACCGTCCGGGACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGA
ACTGCACAACGACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGA
AAGGAACTCTAACTCGAACGAAACCATCTCGAACGAAAAGGAAGCAAAGGAGGCGAACTA
GGAGCCGCGGAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_945#0      CCGCCCACGCGTCCGGACATCTTTCTTTTCTGCTTCTACCACGTTTTACACAAGTTGTGG 60
consensus_945#1      ------------------------------------------------------------
                                                                                 

consensus_945#0      TTCGGACAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTT 120
consensus_945#1      ------------------------------------------------------------
                                                                                 

consensus_945#0      CCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGT 180
consensus_945#1      -------------------------------------------GGTGATCGCCGCGCTGA 17
                                                                * **    *  **  * 

consensus_945#0      GGAGGTCCGT--GTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAG 238
consensus_945#1      AGATGCACGCCGGTGACGCTCGGCCAGACAAGTACAAGGATTACC-CGAAAAAGGGGGGC 76
                      ** *  **   ** ****    **  ***   *  *  ** *   * *           

consensus_945#0      AACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGT 298
consensus_945#1      TACGTGCCGGTCTATGTGCGCTACCCCAACCAAAAGCTCGGTGCGATCAGTCCGGAGTGG 136
                      ****** **   *   * *   ** ** **   ****    **  **   *   ** * 

consensus_945#0      TTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCC-ACCCGCGGTCT 357
consensus_945#1      G-CGGCTGCCTTTCAGGAAAGCTCGGGACGTAGCTCCAGGGGAAAGCTGATCCAGGAACT 195
                       *** * *  * * ** *   * * *  ***   * **  *   **  * **  *  **

consensus_945#0      GTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGGGCTGGCCGTGCG 417
consensus_945#1      G-----AACCGTCCGGG----ACGCTCCCCCTCCGAGTCGAGCAGTGACGAGGAACTGCA 246
                     *      * **  * **    *      * ** * **  ** * ***    **   *** 

consensus_945#0      CCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAAGGGCTGCGAGGT 477
consensus_945#1      CAACG---ACATCACCGCGAAGCCCAAGGCAGTCAAGGGGGACTCGAACAGCAGCGAAA- 302
                     *  **    *  *   * *  ** *       *  **  ** * * **  ** ****   

consensus_945#0      GGTGGTCTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACT 537
consensus_945#1      GGAACTCTAACTCGAACGAAACCATCT-CGAACGAAAAGGAAGCAAA--GGAGGCGAACT 359
                     **   ***    * * *    *  **  **  * **   ** * *    *  * ** ***

consensus_945#0      GATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCT 597
consensus_945#1      -AGGAGCCGCGGAAGC-------------------------------------------- 374
                      * ** **      **                                            

consensus_945#0      GCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATG 657
consensus_945#1      ------------------------------------------------------------
                                                                                 

consensus_945#0      GCAAGA 663
consensus_945#1      ------