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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9475#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1417 fasta sequence
[CCGCAACGGGCTGACCTCGAGCAGGGGCTGCAGTTTCCTTTATTTTGCGTAGTTCGTCAGCCGACCAAACACAAGCAGAGCG-ACAGTTTTCTTGTGCTTTGTGCTTGC-CTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAG-GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCG-GCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAAATCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG-ACGGTGGTCGTGCGGGGCGGCGAC-AAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG-CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA]
[+] EMBL BM609184 [CCGCAACGGGCTGACCTCGAGCAGGGGCTGCAGTTTCCTTTATTTTGCGTAGTTCGTCAGCCGACCAAACACAAGCAGAGCG ACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAG GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCG GCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAAATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG ACGGTGGTCGTGCGGGGCGGCGAC AA ]
[+] EMBL CNS09Q70 [ aTTCGTCAGCCGACCAAACACAAGCAGAGCGAACAGTTTTCTTGTGCTTTGTGCTTGC CTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGCGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGCGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG ACGGTGGTCGTGCGGGGCGGCGAC AAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCACGGGCA CTGACAACAGAGCCTCCAGTTCGGGCAGGACATGCTGCTCGAG ]
[+] EMBL BX604056 [ AAGCAGAGCG ACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAG GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAATTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCT ]
[+] EMBL CNS09DH8 [ TGTGCTTGC CTCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAG GGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGA ]
[+] EMBL BX608724 [ TCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTG ACGGTGGTCGTGCGGGGCGGCGAC AAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCTTTTTTAGCTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTC ]
[+] EMBL CNS092TP [ AACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGAACGGTGGTCGTGCGGGGCGGCGACAAAGCAGCAGAAGCTCCAGGTC ]
[+] EMBL BM612697 [ ccgGCGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGGGTATTTCTCGCGTGCGAC ]
[-] EMBL CNS09CHQ [ GCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG CAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCTTTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA]
[-] EMBL CNS09Q71 [ TCGGGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGACACAATAGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA]
[+] EMBL BX613392 [ CAGCAGAGCGAAGTGATTGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGCTTGTTTTGTTTGTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCG ]
[+] EMBL AGA281143 [ tTTTTTTTGGGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTATGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTATTTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAAAAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCG ]
consensusID : consensus_9475#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1385 fasta sequence
[CCGGCCGACCAAGCACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGAAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACAATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGACNGTGGTCGTGCGGGGCGGCGACNAGCAGCAGAAGCTNCAGGTCGAGAAGCTCACCTCCGACTTTCAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGGCAAGATGAAGCAGGTGTTCCTGGTGGACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGGTAGGGTGCACATTCGTGGACGCGGTGTTATTGTTCCTTTTTTACTAAAATCCTTCTTTTTACACTTTTGCTACTGTAGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGCTTGTTTTGTTTGTTTGGGGAGGGATATTGTGGGATTTCG]
[+] EMBL BM649350 [CCGGCCGACCAAGCACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGAAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACAATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACC ]
[+] EMBL BX626585 [ TTGCACTCCGTTTTCGCTGTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTG AGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGAAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACAATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAATGATATACAAACCGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGACNGTGGTCGTGCGGGGCGGCGACNAGCAGCAGAAGCTNCAGGTCGAGAAGCTCACCTCCGACT ]
[+] EMBL BX616172 [ gcactctgCCGGACGCA AACGGACGCGCGGGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGCACGGTGCCGGAAGAATCGTCCCCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACTGCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGGCACGAATCAGCGGATAGGCACCACCACCAAGGACCTGCAGCGGTTGACGGTGGTCGTGCGGGGCGGCGACAAGCAGCAGAAGCTCCAGGTCGAGAAGCTCACCTCCGACTTTCAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCGGGCAAGATGAAGCAGGTGTTCCTGGTGGACGCTTCCCAGGCGGACGATCTGGCGA ]
[+] EMBL BX606699 [ ATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAGCAGAGCGAAGTGATTGGTAGGGTGCACATTCGTGGACGCGGTGTTATTGTTCCTTTTTTACTAAAATCCTTCTTTTTACACTTTTGCTACTGTAGACACAATCGAAAACTCGATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGCTTGTTTTGTTTGTTTGGGGAGGGATATTGTGGGATTTCG]
consensusID : consensus_9475#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[AGAATNGCCCGAGGTTTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATTAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCTGGCGCAAGGTTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGNAAAACGCTTTCCTTTTTAGTATGTATGNAAGNGGGAGGGATATTNGTGGGATTATCGTAACAGGGGGCTCGTACCTCCGGGCTAACCGAGGATATTCATGGTCGAGACGATGGCGTATTCCTTTCTTCTTATGGTATGTATATTGAACATATACTTTTAATGTGTATTTCTCGCGGTGCGA]
[+] EMBL AL930838 [AGAATNGCCCGAGGTTTTTTACTCCAAAAGCCAGCAGAGTATAGCGGCCAAGATTAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAACAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCTGGCGCAAGGTTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGNAAAACGCTTTCCTTTTTAGTATGTATGNAAGNGGGAGGGATATTNGTGGGATTATCGTAACAGGGGGCTCGTACCTCCGGGCTAACCGAGGATATTCATGGTCGAGACGATGGCGTATTCCTTTCTTCTTATGGTATGTATATTGAACATATACTTTTAATGTGTATTTCTCGCGGTGCGA]
consensusID : consensus_9475#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[CAGACGACAGTTTTCTTGTGCTTTGTGCTTGCATCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCACGGCAGC]
[+] EMBL CNS09CHP [CAGACGACAGTTTTCTTGTGCTTTGTGCTTGCATCCGTTTTCGCTGTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAGCGCGCCTCTGTTGGACACCGTTCGTCCAAGTAGAGGACGCAACCGCACGCACACCCGACGGGAGTGAGTGCACCGGGAGTGTCCCCGGAGACAGCCAGCAAGTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAACGAGATTACGGTGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTCGGACGGGAACTTTGGCGGGTTCAGCCCGACCGAGTTCATCTCGCTGAGCGAATCGATTGCGGCGAACACGATCTTCGTGAAGCAGAGCTGGCAGTTTCTGGAGAAGGCTAACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAATGACATTCAAACGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGACGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCACGGCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9475#1 --------------------------------------------------------CCGG 4
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 CCGCAACGGGCTGACCTCGAGCAGGGGCTGCAGTTTCCTTTATTTTGCGTAGTTCGTCAG 60
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 CCGACCAAGCACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCACTCCGTTTTCG 64
consensus_9475#3 ---------------CAGA-CGACAGTTTTCTTGTGCTTTGTGCTTGCA-TCCGTTTTCG 43
consensus_9475#0 CCGACCAAACACAAGCAGAGCGACAGTTTTCTTGTGCTTTGTGCTTGCC-TCCGTTTTCG 119
consensus_9475#2 -------------AGAATNGCCCGAGGTTTTTTACTCCAAAAGCCAGCAGAGTATAGCGG 47
* * ** *** ** * ** ** * *
consensus_9475#1 CT--------GTTGGTGTTCCTGGCCACCGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAG 116
consensus_9475#3 CT--------GTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAG 95
consensus_9475#0 CT--------GTTGGTGTTCCTGGCCACAGTTCCTCTGGAAAGGCAGAAAAGGGCAGGAG 171
consensus_9475#2 CCAAGATTAAGCAGGTGTTCCTGGTGAACGCTTCCCAGG--CGGACGATCTGGCGAACGA 105
* * *********** * * * * * ** ** ** ** *
consensus_9475#1 CGCGCCTCTGTTGGACACCGTTCGTCCA-AGTAGAGGACGCAACCGCACGCACACCCGAC 175
consensus_9475#3 CGCGCCTCTGTTGGACACCGTTCGTCCA-AGTAGAGGACGCAACCGCACGCACACCCGAC 154
consensus_9475#0 CGCGCCTCTGTTGGACACCGTTCGTCCA-AGTAGAGGACGCAACCGCACGCACACCCGAC 230
consensus_9475#2 CGCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTG-C 164
*** * ** *** * * ** ** * *** * *** ** * * *
consensus_9475#1 GGGAGTGAGAAGGTGGAGCAGGAACAGGCAGCCTTACGTACGGTGCCGGAAGAATCGTCC 235
consensus_9475#3 GGGAGTGAG--------------------------------------------------- 163
consensus_9475#0 GGGAGTGAG--------------------------------------------------- 239
consensus_9475#2 AACAGAGCC--------------------------------------------------- 173
** *
consensus_9475#1 CCCCAGGTTTCAGTGCGCTTTTTGAGAGCGTGGTGCTGGTGGTCTAGCTAGCAACTCACT 295
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 ------------------------------------------------------------
consensus_9475#2 ------------------------------TCCAGTTCGAGCAGGACATGCTGCTCGAGC 203
consensus_9475#1 GCAGAAAGTTCCCCTCTTTTCTTCATCGAAACACAGTGCACCGGGAGTGTCCCCGGAGAC 355
consensus_9475#3 ------------------------------------TGCACCGGGAGTGTCCCCGGAGAC 187
consensus_9475#0 ------------------------------------TGCACCGGGAGTGTCCCCGGAGAC 263
consensus_9475#2 GGGAGCAGCGCTTCCGGGAGATTGAGGCGAACGTGCTGGACGTGAACCATATCATGAAGG 263
** ** * * * * **
consensus_9475#1 AGCCA-GCAA-GTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAA 413
consensus_9475#3 AGCCA-GCAA-GTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAA 245
consensus_9475#0 AGCCA-GCAA-GTCAGCCATGTCAAGGGAAGGTCTCGGACTGCCACGAGGAATCGGTCAA 321
consensus_9475#2 AGCTAAGCAACATCACTCCCAGCAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGG 323
*** * **** *** * ** * * ** *** *** * ** **
consensus_9475#1 CGAGATTACGG----TGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTC 469
consensus_9475#3 CGAGATTACGG----TGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTC 301
consensus_9475#0 CGAGATTACGG----TGCGATGAGCAGTACGGCGTCGGCGGCAGCGACCGGCAGCGGCTC 377
consensus_9475#2 CCGAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCA 383
* * ** * * **** ** *** * * ** * * * * *
consensus_9475#1 GGACGGAAACTTTG-GCGGGTTCAGCCCGACCGAGTTCATC-TCGCTGAGCGAATCGATT 527
consensus_9475#3 GGACGGGAACTTTG-GCGGGTTCAGCCCGACCGAGTTCATC-TCGCTGAGCGAATCGATT 359
consensus_9475#0 GGACGGGAACTTTG-GCGGGTTCAGCCCGACCGAGTTCATC-TCGCTGAGCGAATCGATT 435
consensus_9475#2 GAACCGGTACCTGGCGCAAGGTTG--CTGATCCTGCTGATCGTCGCTGTGATATTGGGTC 441
* ** * ** * * ** * * * ** * * * *** ****** * * * * *
consensus_9475#1 --GCGGCGAACA-CAATCTTCGTG---AAGC---AGAGCTGGCAGTTTCTGGAGAAGGCT 578
consensus_9475#3 --GCGGCGAACA-CGATCTTCGTG---AAGC---AGAGCTGGCAGTTTCTGGAGAAGGCT 410
consensus_9475#0 --GCGGCGAACA-CGATCTTCGTG---AAGC---AGAGCTGGCAGTTTCTGGAGAAGGCT 486
consensus_9475#2 TCGTGGTGACCGGCCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGNAAAACGCTT 501
* ** ** * * ** * *** **** * **** * * * * * *
consensus_9475#1 AACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTAAGGGATAAGATCAAT--GATA 636
consensus_9475#3 AACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAGATCAAT--GACA 468
consensus_9475#0 AACCGGACGATCGGCACGGCCAAGGACAATCAGTCGCTGCGGGATAAAATCAAT--GACA 544
consensus_9475#2 TCCTTTTTAGTATGTATGN--AAGNGGGAGGGATATTNGTGGGATTATCGTAACAGGGGG 559
* * * * * *** * * ***** * ** *
consensus_9475#1 TACAAACCGGCA---CGAATCAG------CGGATAGGCACCACCACCAAGGACC-TGCAG 686
consensus_9475#3 TTCAAACGGCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGG 528
consensus_9475#0 TTCAAACGGGCA---CGAATCAG------CGGATAGGCACCACCACCAAGGACC-TGCAG 594
consensus_9475#2 CTCGTACCTCCGGGCTAACCGAGGA--TATTCATGGTCGAGACGATGGCGTATT-CCTTT 616
* ** * * ** * * * * *
consensus_9475#1 CGGTTGACNGTGGTCGTGCGGGGC---GGCGACNAGCAGCAGAAGCTNCAGGTCGAGAAG 743
consensus_9475#3 CGAACGACGCCGG-CATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAG--CGGCACG 585
consensus_9475#0 CGGTTGACGGTGGTCGTGCGGGGC---GGCGACAAGCAGCAGAAGCTCCAGGTCGAGAAG 651
consensus_9475#2 CTTCTTATGGTATGTATATTGAAC---ATATACTTTTAATGTGTATTTCTCG-CGGTGCG 672
* * * * * * * * * ** *
consensus_9475#1 CTCACCTCCGACTTTCAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCG 803
consensus_9475#3 GCAGC------------------------------------------------------- 590
consensus_9475#0 CTCACCTCCGACTTCAAGCAGGTGGTGGAGTTTTACTCCAAAAGCCAGCAGAGTATAGCG 711
consensus_9475#2 A----------------------------------------------------------- 673
consensus_9475#1 GGCAAGATGAAGCAGGTGTTCCTGGTGGACGCTTCCCAGGCGGACGATCTGGCGAACGAC 863
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 GCCAAGATGAAGCAGGTGTTCCTGGTGAACGCTTCCCAGGCGGACGATCTGGCGAACGAC 771
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 GCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAA 923
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 GCCGGCATACCGGGCACGGCCGAACAGCAGCAGGAGCTGCAGCGGCAGCGGCAGCTGCAA 831
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 CAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATT 983
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 CAGAGCCTCCAGTTCGAGCAGGACATGCTGCTCGAGCGGGAGCAGCGCTTCCGGGAGATT 891
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 GAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAG 1043
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 GAGGCGAACGTGCTGGACGTGAACCATATCATGAAGGAGCTAAGCAACATCACCTCCCAG 951
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 CAGAGCGAAGTGATTGGTAGGGTGCACATTCGTGGACGCGGTGTTATTGTTCCTTTTTTA 1103
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 CAGAGCGAAGTGATTGACACAATCGAAAACTCAATCGGCCGAACGGTGGACAACGTGGAG 1011
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 CTAAAATCCTTCTTTTTACACTTTTGCTACTGTAGACACAATCGAAAACT-CGATCGGCC 1162
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 AGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGAACCGGTACCGGCGCAAGGTG 1071
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 GAACGGTGGACAACGTGGAGAGCGGTGCGGAGGAGCTGGTCAAGGCGGCCGAGTACCAGA 1222
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 CTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGGTGACCGGCATTATTGTGTCG 1131
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 ACCGGTACCGGCGCAAGGTGCTGATCCTGCTGATCGTCGCTGTGATATTGGGTCTCGTGG 1282
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 AAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTTTAGTTTGTTTTGTTTGTTTG 1191
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 TGACCGGCATTATTGTGTCGAAGCTGAAAAGCTAAGAATGCTGCAAAACGCTTTCCTTTT 1342
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 GGAGGGATATTGTGGGATTTCGTAACGGGGGCTCGTCCTCCGGGCTACCCGAGGATATTA 1251
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 TAGCTTGTTTTGTTTGTTTGGGGAGGGATATTGTGGGATTTCG----------------- 1385
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 TGGTCGAGCGATGGCGTATCCTTTTTCTTTGTTTGTTTTGACATATCTTTTAATGTGTAT 1311
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 ------------------------------------------------------------
consensus_9475#3 ------------------------------------------------------------
consensus_9475#0 TTCTCGCGTGCGACGTTGTGTTTATTCAGTTTTGAAAGTTAACTTATAAAGAGAAGAAAA 1371
consensus_9475#2 ------------------------------------------------------------
consensus_9475#1 ----------------------------------------------
consensus_9475#3 ----------------------------------------------
consensus_9475#0 AAGGTCGTCGCAACAGGTTAGAGGCAGAAGTATACCGCGTTAGCGA 1417
consensus_9475#2 ----------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||