cluster # 9502

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Anopheles gambiae
cluster # 9502 cluster # 9502 Sequences # 17 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9502#0 length = 490 sequences # 13

consensus_9502#1 length = 482 sequences # 4

consensusID : consensus_9502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 490
fasta sequence

                              [GGATGCAGTCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCT-GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT-GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA--T-TGAAG-T-GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGC]

[+] EMBL CNS08TDU             [GGATGCAGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCT GCGAA  ACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  G CCAGG G GA GGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGC]
[+] EMBL BM609612             [        cCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCTTCTGTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCAGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG                                                      ]
[+] EMBL BM596117             [         ccgGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG                                                      ]
[+] EMBL BM593423             [              ccGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATTTAAAGCCGAT                                                    ]
[+] EMBL BM612408             [              ccGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAG                                                                                                                                                                                                                                 ]
[+] EMBL BM601657             [                ccGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAAGGTCTTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACTAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGATGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCTAGGGAGATGGAGGTGCAAGTATCGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAGGGACGAATAAATCTGTTATTTATTGCCGATT                                                   ]
[+] EMBL BM636521             [               ccgGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATTTAAAGCCGAT                                                    ]
[+] EMBL BM646465             [                ccGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAAGGTCTTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACTAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGATGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCTAGGGAGATGGAGGTGCAAGTATCGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAGGGACGAATAAATCTGTTATTTATTGCCGATTAcg                                                ]
[+] EMBL BM594623             [                            ccgCGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTGTACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATTTAAAGCCG                                                      ]
[+] EMBL BM624764             [                            ccgCGACGAGAAAGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCTTCTGTTTTCCTGTACGCT GCGAAGCACCGATAAAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCAGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG                                                      ]
[+] EMBL BM586830             [                                      ccgGTGATTTTGCAAACCGTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCCCAAGGTCTTTAGTGTCCTCTTTTTTCCTGTACGCT GCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCT GCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTA  T TGAAG T GAGGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCG                                                      ]
[-] EMBL CNS08NWF             [                                                                                                                          ctCAAGGTCTTTAGTTTCTTCTTTTTTCCTGTACGCTGGCGAAGCACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATAATTGCAAATGCACCAGCG                                                                                                                                                                                                                                                                       ]
[-] EMBL CNS08L4P             [                                                                                                                                                                      CACCGATAGAAAACTGCACCTAAAGATGCCCTGCCAGTGCTGTGGAAATTATTGCAAATGCACCAGCGGGTGTGGCAGTGGTAAATCCTGTGCGACGGATTGCAAATGTGCCTCGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGTGGTTGCTGCGGCAAATGAGGTA  T TGAAG T TAGGGGCAAGTATTGATGGGGAGTGCTACGAATCTCGGCTGAAGGCATGTCG                                                                                                   ]




>consensus_9502#0
GGATGCAGTCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGTGT
GATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACG
TGCCCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGAAGCACCGATAGAAAACT
GCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGG
CAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGA
AAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTATTGAAGTGAGGGGCAAGTATTGATGGGA
AGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAAT
CTGTTATTTAAAGCCGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTG
CCCGAGCTGC

consensusID : consensus_9502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 482
fasta sequence

                              [AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCCGCGGGCC]

[+] EMBL CNS08DKN             [AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCCGCGGGCC]
[+] EMBL CNS08NWE             [     CGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCG TGTGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTGGCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATTTAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGggggggggg               ]
[-] EMBL CNS08DKO             [                                                                                                                                                                                                       GTGGAAATGATTGCAAATGCACCGGCGGGTGTGGGAGTGGCCAGTCCTGTGCGACGGATTGCAAATGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGGGGGCAAGTTTTGt                                                                                                                                       ]
[-] EMBL BM606128             [                                                                                                                                                                                                                                                                                                                                                  ctagATTGATGGGAAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATATGTTATT                                                              ]




>consensus_9502#1
AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTGTGATTA
GTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTACGTGCTC
AAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGACACCGATAGAAAACTGCACCTA
AAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTGGCAGTGGC
CAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGGAAAAGTCC
GGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGGCAAGTATTGATGGGAAGTGCTAC
GAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAATCTGTTATT
TAAAGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGACCCGCGGG
CC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9502#0      GGATGCAGTCGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCG-TG 59
consensus_9502#1      ------AGTAGCGAGAGAGCAACCACCGGTACGACGAGAAAGTGATTTTGCAAACCGCTG 54
                            *** *********************************************** **

consensus_9502#0      TGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTAC 119
consensus_9502#1      TGATTAGTTTGAAGCAAGCGTTGTCACGAGCAACGGGTGAAAGTATACCACGACTACTAC 114
                      ************************************************************

consensus_9502#0      GTGCCCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGAAGCACCGATAGAAAAC 179
consensus_9502#1      GTGCTCAAGGTCTTTAGTGTCTTCTTTTTTCCTGTACGCTGCGA--CACCGATAGAAAAC 172
                      **** ***************************************  **************

consensus_9502#0      TGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCAGCGGATGTG 239
consensus_9502#1      TGCACCTAAAGATGCCCTGCAAGTGCTGTGGAAATGATTGCAAATGCACCGGCGGATGTG 232
                      ************************************************** *********

consensus_9502#0      GCAGTGGCCAGCCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGG 299
consensus_9502#1      GCAGTGGCCAGTCCTGTGCGACGGATTGCAAGTGTGCCTGCGCGAGCGGTGGTTGCAAGG 292
                      *********** ************************************************

consensus_9502#0      AAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTATTGAAGTGAGGGGCAAGTATTGATGGG 359
consensus_9502#1      AAAAGTCCGGCGGTTGCTGCGGCAAGTGAGGTAGCCAGGGGAGGG-CAAGTATTGATGGG 351
                      *********************************   * * ***** **************

consensus_9502#0      AAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAA 419
consensus_9502#1      AAGTGCTACGAATCTCGGCTGAAGGCATGTCGGTAACCACAACCACGAAGGACGAATAAA 411
                      ************************************************************

consensus_9502#0      TCTGTTATTTAAAGCCGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT 479
consensus_9502#1      TCTGTTATTTAAAGCCGA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGT 466
                      ******************     ******************************** ****

consensus_9502#0      GCCCGAGCTGC----- 490
consensus_9502#1      GCCCGACCCGCGGGCC 482
                      ****** * **