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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1340 fasta sequence
[ATTAGTTGCTTCGAACAACCGGAACAGAGCGTGAGA-GAGTGTAGCAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCG-AGTTTGAAAGTGTTTGGCCACTTCGAAAGCG-AACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTG-TGCGTGT-GT-GGACGAACT-GGCAT-CCACGTCT-GGCAAT-CATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCCAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTCCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGAAGGTGCTGCTGGAA-CGTTCTGTCTCGAGCACGACATCTACATTATACGGGTAAGTTTAACAGTGTAACAAGTGTTTGAAAAAATAAGGACAGAACACTAACGATGATTCCTTATCCACCACAGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGCCACAACCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAGGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTACGTGCAAAATAAAA]
[+] EMBL CNS08SWJ [ATTAGTTGCTTCGAACAACCGGAACAGAGCGTGAGA GAGTGTAGCAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCG AGTTTGAAAGTGTTTGGCCACTTCGAAAGCG AACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTTGCGTGTGGTGGGACGAACTGGGCATGCCACGTGTGGGCAATGCAT ]
[+] EMBL CNS092P9 [ GAACAACCGGAACAGAGCGTGAGAGGAGTGTAGCAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCG AGTTTGAAAGTGTTTGGCCACTTCGAAAGCG AACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTCCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTG TGCGTGT GT GGACGAACT GGCAT CCACGTCT GGCAAT CATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCCAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTCCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGAAGGTGCTGCTGGAA CGTTCTGTCTCGAGCACGACATCTACATTATACGGGTAAGTTTAACAGTGTAACAAGTGTTTGAAAAAATAAGGACAGAACACTAACGATGATTCCTTATCCACCACAGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGCCACAACCTCT ]
[+] EMBL CNS08GBA [ CTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGCAGTTTGAAAGTGTTTGGCCACTTCGAAAGCGCAACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTG TGCGTGT GT GGACGAACT GGCAT CCACGTCT GGCAAT CATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGT ]
[+] EMBL CNS099KH [ TCGTCCGCG AGTTTGAAAGTGTTTGG CACTTCGAAAGCG AACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTG TGCGTGT GT CGACGAACT GGCA ]
[-] EMBL CNS092PA [ CACTTCT GGCAAT CATTAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCAAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGAAGGGGCTGCTGGAAGCGTTTTTTCTCGAGCACAACATCTACATTATACGGGTAAGTGTAACAGTGTAACAAGTGTTTGAAAAAATAAGGACAGAAAACTAACGATGATTCCTTATCCACCACAGGTCGACAGTGCGGACAAATTGAGCCGTTTGGGGCAGTCTCCGGTTGTGGCGTCCTGTGGGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGAACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGCAACATCCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAGGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTACGTGCAAAATAAAA]
consensusID : consensus_9528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1235 fasta sequence
[TAGTGTGTAGAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTTGAAAGTGTTTGGCCACTTCGAAAGCGAACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGCATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCAAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGC-AACATCCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTACGTGGAAAATAAAACA]
[+] EMBL CNS09MNO [TAGTGTGTAGAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTTGAAAGTGTTTGGCCACTTCGAAAGCGAACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCCAAAGCATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCAAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGC AACATCCTCTCGTGTGTTTAGTTTTGTG ]
[+] EMBL CNS09C9L [ TTGTGTTTGTCTCGTCCGCGAGTTTGAAAGTGTTTGGCCACTTCGAAAGCGAACAGAATAGACATTTCTAATTGAAGACG TGTGCACGGGTGTGAAGTGT ]
[-] EMBL CNS09MNP [ CGCCCGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACCCCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCAAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAATTTGCCCGAAAAGTGAGC AACATCCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTCGGTGG ]
[-] EMBL CNS08SWK [ CGAACGGTTTCCATACGGTTGGGATCGGATCGAGCGCAAGGAAGGCCCTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGC AACATCCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTACGTGCAAAATAAAACA]
[-] EMBL CNS08GBB [ GAGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCTCACAAACCCATTATCAAATTGCCCGAAAAGTGAGC AACATCCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTACG ]
[-] EMBL CNS09C9M [ GCACTGTGAGCTGTACTGGGACGAACCACACAAACCCGTTATCAAATTGCCCGTAAAGTGAGC AA AACAACCCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGGGCGAGCGACCTTGCTTGTGCTATAGAATGGCAAATTTTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCAATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACA ]
[-] EMBL CNS099KI [ ctgcccTTGCCCGAAAAGTGAGCAAACATCCTCTCGTGTGTTTAGTTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGAGCGAGTGACCTTGCTTGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAGGTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCACCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTACTTTTAAACGCAAATTA ]
consensusID : consensus_9528#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1000 fasta sequence
[CCGGGAACAGCAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTAGAAAGTGTTTAGCGAACAGAATAGACATTTCGAATTAAAGACGTGTGCACGGGTGTGAAGTGTATTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGGGCGCGCGTTTGAGCTTGGACTACTTGGGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCCAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGACGATGGAGTCGAACGGTTTCCACACGGTCGGGATCGGATCGAGCGCAAGGAAGGCACTGTTGAGCGCGCTGGAGGATAAACGGCTGGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCAGGTTGTGGCGTCCTGTGCCTTGGTACGCAAGCTGCCACCAAAAATGCTACGAAGAATGACGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAAGCTTGTACTGGGGACGAAACCTCCCAAACCCCGTTATCCAAATTGCCCCGAAAAGGGAGCAACACTCCCCCCCGGTGGGGTTAAATTTTTGGGGAAAACCAAAAAGGACGTCCCCTTTATGGGAAACCCAAAAGGGCCAACAAAAGGGGGGAGCGGACCCTTGTCCTTTAGGGCTTTAAAAAAGGGGCA]
[+] EMBL BM624956 [CCGGGAACAGCAATCTTTGTCGGGTGGGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTAGAAAGTGTTTAGCGAACAGAATAGACATTTCGAATTAAAGACGTGTGCACGGGTGTGAAGTGTATTTGCCAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCACCAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGGGCGCGCGTTTGAGCTTGGACTACTTGGGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCCAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGACGATGGAGTCGAACGGTTTCCACACGGTCGGGATCGGATCGAGCGCAAGGAAGGCACTGTTGAGCGCGCTGGAGGATAAACGGCTGGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGTCGA ]
[+] EMBL BM657861 [ cCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCACGTTTGAGCTTGGACTACTTGTGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGACGATGGAGTCGAACGGTTTCCACACGGTTGGGATCGGATCGAGCGCAAGGAAGGCATTGTTGAGCGCGCTGGAGGATAAACGGTTAGTCGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGCTGTACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCGTTCTGCCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCAGGTTGTGGCGTCCTGTGCCTTGGTACGCAAGCTGCCACCAAAAATGCTACGAAGAATGACGCAGCGCCTTTCGTCGATCTGAAAGCATCCTAATCGAGCACTGTGAAGCTTGTACTGGGGACGAAACCTCCCAAACCCCGTTATCCAAATTGCCCCGAAAAGGGAGCAACACTCCCCCCCGGTGGGGTTAAATTTTTGGGGAAAACCAAAAAGGACGTCCCCTTTATGGGAAACCCAAAAGGGCCAACAAAAGGGGGGAGCGGACCCTTGTCCTTTAGGGCTTTAAAAAAGGGGCA]
consensusID : consensus_9528#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 908 fasta sequence
[AGAATTCCCGAGGNTCGTACATGGGTCTGAAGGCATNGGATAAGGAAAGATGATNGAGTCGAACGGTTTCCACACGGTTGGGATCGGATCGAGCGCGAGGAAGGCACTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTCCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCATTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAGCTGCCACCGAAAATGCTACGTAGAATGAGCAGC-GCCTTCCGACGATCTTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACC-ACAC-AAACCCGTTATCAAATTGCCCGAAAAGTGAG-CAACACATCCCGTGTGTTTAGTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGGGCGAGCGACCTTGCTTGTGCTATAGAATGGCNAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTNTGAAATCCCTTTANCCGGNTAGCCGGCGCAAACCGGTNGGCCGTACGCATAAGCTAGGTTAAGCTAGCGGATACACAAGGAGCTACGAACCGGTCGCAACTTTGACCANTTGGCGGTCCACCAAACAGGTGCTGCACTGTAGCCAAACGGACTCGGTTGGAAAANGTTGTGGCACACCGGCATCTCTACTCGTCAACTTTAAGAGCTAATTACGTGCACACATTAAAACCACGNAAAATCACCACACATNAACAC]
[+] EMBL AL931368 [AGAATTCCCGAGGNTCGTACATGGGTCTGAAGGCATNGGATAAGGAAAGATGATNGAGTCGAACGGTTTCCACACGGTTGGGATCGGATCGAGCGCGAGGAAGGCACTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTCCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAGGAGGTGCTGCTGGAAGCATTCTGTCTCGAGCACGACATCTACATTATACGGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCGGTTGTGGCGTCCTGTGCGCTGGTACGCAAGCTGCCACCGAAAATGCTACGTAGAATGAGCAGC GCCTTCCGACGATCTTGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACC ACAC AAACCCGTTATCAAATTGCCCGAAAAGTGAG CAACACATCCCGTGTGTTTAGTTTGTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGGGCGAGCGACCTTGCTTGTGCTATAGAATGGCNAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGGGCCATAAGTTNTGAAATCCCTTTANCCGGNTAGCCGGCGCAAACCGGTNGGCCGTACGCATAAGCTAGGTTAAGCTAGCGGATACACAAGGAGCTACGAACCGGTCGCAACTTTGACCANTTGGCGGTCCACCAAACAGGTGCTGCACTGTAGCCAAACGGACTCGGTTGGAAAANGTTGTGGCACACCGGCATCTCTACTCGTCAACTTTAAGAGCTAATTACGTGCACACATTAAAACCACGNAAAATCACCACACATNAACAC]
[+] EMBL BX619677 [ CACCGAAAATGCTACGTAGAATGAGCAGCGGCCTTCCGACGATC TGAAAGCATCCTAATCGAGCACTGTGAGCTGTACTGGGACGAACCNACACAAAACCCGTTATCAAATTGCCCGAAAAGTGAGCCAACcac ]
consensusID : consensus_9528#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[CCGCCCACGCGTCCGGGAGAGCGGGCACGCGTTTGAGCTTGGACTACTTGTGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCACACGGTTGGGATCGGATCGAGCGCGAGGAAGGCACTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTCCTGGCACCGTTCGACGACCACGGTGAGA]
[+] EMBL BM625915 [CCGCCCACGCGTCCGGGAGAGCGGGCACGCGTTTGAGCTTGGACTACTTGTGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGTGGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAGTCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGTTTCCACACGGTTGGGATCGGATCGAGCGCGAGGAAGGCACTGTTGAGCGCGCTGGAGGATAAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTGTACAATTTTTGCTTCCTGGCACCGTTCGACGACCACGGTGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9528#1 ----------------------------------TAGTGTGTAGAATCTTTGTCGGGTGG 26
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 ----------------------------------CCGGGAACAGCAATCTTTGTCGGGTG 26
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 ATTAGTTGCTTCGAACAACCGGAACAGAGCGTGAGAGAGTGTAGCAATCTTTGTCGGGTG 60
consensus_9528#1 GCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTTGAAAGTGTTTGGCCACTTCGAAAGC 86
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 GGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTAGAAAGTGTTT------------AG 74
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 GGCGCGCGTGCTTGTGTTTGTCTCGTCCGCGAGTTTGAAAGTGTTTGGCCACTTCGAAAG 120
consensus_9528#1 GAACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGCC 146
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 CGAACAGAATAGACATTTCGAATTAAAGACG---TGTGCACGGGTGTGAAGTGTATTTGC 131
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 CGAACAGAATAGACATTTCTAATTGAAGACGAATTGTGCACGGGTGTGAAGTGTGTTTGC 180
consensus_9528#1 AAAGCATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCAC 206
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 CAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCAC 191
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 CAAAGATAACAAACGGCACCTTTCTCGTTTGTTTAGAGAACGAGTTGCAATTGCAAGCAC 240
consensus_9528#1 CAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCC 266
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 CAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGGGCGCG 251
consensus_9528#4 -------------------------------CCGCCCACGCGTCCGGGAGAGCGGGCACG 29
consensus_9528#0 CAAGTAGTAGGCCATCATCCAGCGCCATTTCACAACCTTGCCCAACGGAGAGCGCGCGCC 300
consensus_9528#1 CGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGT 326
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 CGTTTGAGCTTGGACTACTTGGGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGT 311
consensus_9528#4 CGTTTGAGCTTGGACTACTTGTGGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGT 89
consensus_9528#0 CGTTTGAGCTTGGACTACTTGTAGTGGAAGGGTGAAAGTAGACGGCATTCCAGAGAAGGT 360
consensus_9528#1 GGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAG 386
consensus_9528#3 -------------------------------------------------AGAATTCCCGA 11
consensus_9528#2 GGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAG 371
consensus_9528#4 GGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAG 149
consensus_9528#0 GGTGCATCACGTGCTTGTGCGTGTGTGGACGAACTGGCATCCACGTCTGGCAATCATCAG 420
*** *
consensus_9528#1 TCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGT 446
consensus_9528#3 --GGNTCGTAC-ATGGGTCTGAAGGCATNGGAT-AAGGAAAGATGATNGAGTCGAACGGT 67
consensus_9528#2 TCCAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGACGATGGAGTCGAACGGT 431
consensus_9528#4 TCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGT 209
consensus_9528#0 TCAAAGCGTACCATGGTCCTGAAGGCATCGGATGAAGGAAAGATGATGGAGTCGAACGGT 480
***** **** ********** **** ********* *** ************
consensus_9528#1 TTCCATACGGTTGGGATCGGATCGAGCGCAAGGAAGGCCCTGTTGAGCGCGCTGGAGGAT 506
consensus_9528#3 TTCCACACGGTTGGGATCGGATCGAGCGCGAGGAAGGCACTGTTGAGCGCGCTGGAGGAT 127
consensus_9528#2 TTCCACACGGTCGGGATCGGATCGAGCGCAAGGAAGGCACTGTTGAGCGCGCTGGAGGAT 491
consensus_9528#4 TTCCACACGGTTGGGATCGGATCGAGCGCGAGGAAGGCACTGTTGAGCGCGCTGGAGGAT 269
consensus_9528#0 TTCCATACGGTTGGGATCGGATCGAGCGCCAGGAAGGCCCTGTTGAGCGCGCTGGAGGAT 540
***** ***** ***************** ******** *********************
consensus_9528#1 AAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTG 566
consensus_9528#3 AAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTG 187
consensus_9528#2 AAACGGCTGGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTG 551
consensus_9528#4 AAGCGGCTAGTTGTTGGGTTGGCCAGTGCCGTACGCAGCTTGGCGGCCAATCCGGAGTTG 329
consensus_9528#0 AAGCGGCTAGTTGTTGGGTTGGCCAGTCCCGTACGCAGCTTGGCGGCCAATCCGGAGTTG 600
** ***** ****************** ********************************
consensus_9528#1 TACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAG 626
consensus_9528#3 TACAATTTTTGCTTCCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAG 247
consensus_9528#2 TACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAG 611
consensus_9528#4 TACAATTTTTGCTTCCTGGCACCGTTCGACGACCACGGTGAGA----------------- 372
consensus_9528#0 TACAATTTTTGCTTTCTGGCACCGTTCGACGACCACGGTGAGAGTGGTAGCCACATGCAG 660
************** ****************************
consensus_9528#1 GAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGT------- 679
consensus_9528#3 GAGGTGCTGCTGGAAGCATTCTGTCTCGAGCACGACATCTACATTATACGGGT------- 300
consensus_9528#2 GAGGTGCTGCTGGAAGCGTTCTGTCTCGAGCACGACATCTACATTATACGGGT------- 664
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 AAGGTGCTGCTGGAA-CGTTCTGTCTCGAGCACGACATCTACATTATACGGGTAAGTTTA 719
consensus_9528#1 ------------------------------------------------------------
consensus_9528#3 ------------------------------------------------------------
consensus_9528#2 ------------------------------------------------------------
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 ACAGTGTAACAAGTGTTTGAAAAAATAAGGACAGAACACTAACGATGATTCCTTATCCAC 779
consensus_9528#1 -------CGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCC-GGTTGTGGCGTCC 731
consensus_9528#3 -------CGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCC-GGTTGTGGCGTCC 352
consensus_9528#2 -------CGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCCAGGTTGTGGCGTCC 717
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 CACAGGTCGACAGTGCGGACAAATTGAGCCGTTTGGTGCAGTCTCC-GGTTGTGGCGTCC 838
consensus_9528#1 TGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGA-GCAGCGCCTTTCG 790
consensus_9528#3 TGTGCGCTGGTACGCAAGCTGCCACCGAAAATGCTACGTAGAATGA-GCAGCGCCTTCCG 411
consensus_9528#2 TGTGCCTTGGTACGCAAGCTGCCACCAAAAATGCTACGAAGAATGACGCAGCGCCTTTCG 777
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 TGTGCGCTGGTACGCAAACTGCCACCGAAAATGCTACGAAGAATGA-GCAGCGCCTTTCG 897
consensus_9528#1 TCGATCT-GAAAGCATCCTAATCGAGCACTGTGAG--CTGTACTGGGA--CGAACCTCAC 845
consensus_9528#3 ACGATCTTGAAAGCATCCTAATCGAGCACTGTGAG--CTGTACTGGGA--CGAACCACAC 467
consensus_9528#2 TCGATCT-GAAAGCATCCTAATCGAGCACTGTGAAGCTTGTACTGGGGACGAAACCTCCC 836
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 TCGATCT-GAAAGCATCCTAATCGAGCACTGTGAG--CTGTACTGGGA--CGAACCTCAC 952
consensus_9528#1 AAACCC-ATTATC-AAATTGCCC-GAAAAGTGAGCAACATCCTCTCGTGTGTTTAGTTTT 902
consensus_9528#3 AAACCC-GTTATC-AAATTGCCC-GAAAAGTGAGCAACA-CATCCCGTGTGTTTAGTTT- 522
consensus_9528#2 AAACCCCGTTATCCAAATTGCCCCGAAAAGGGAGCAACA-CTCCCCCCCGGTGGGGTTAA 895
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 AAACCC-ATTATC-AAATTGCCCGAAAAGTGAGCCACAA-CCTCTCGTGTGTTTAGTTTT 1009
consensus_9528#1 GTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGAGCGAGTGACCTTGCT 962
consensus_9528#3 GTGAAACAAGAGGACGTCCTTTAGGAAGCCAGAGCGCAACAACGGGCGAGCGACCTTGCT 582
consensus_9528#2 ATTTTTGGGGAAAAC--CAAAAAGGACGTCCCCTTTATGGGAAACCCAAAAGGGCCAACA 953
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 GTGAAACAAGAGGACGTCCTTTAGGAGGCCAGAGCGCAACAACGAGCGAGTGACCTTGCT 1069
consensus_9528#1 TGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGG 1022
consensus_9528#3 TGTGCTATAGAATGGCNAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGG 642
consensus_9528#2 AAAGGGGGGAGCGGACCCTTGTCCTTTAGGGCTTTAAAAAAGGGGCA------------- 1000
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 TGTGCTATAGAATGGCAAATATTCTCCACTTACCTAAGAGCTAACTAGGCCAACTTCAGG 1129
consensus_9528#1 GCCATAAGTTT-GAAATCC-TTTAGCCGGT-AGCGGG---AAACCGG-GGGCCGTACG-A 1074
consensus_9528#3 GCCATAAGTTNTGAAATCCCTTTANCCGGNTAGCCGGCGCAAACCGGTNGGCCGTACGCA 702
consensus_9528#2 ------------------------------------------------------------
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 GCCATAAGTTTGAAATCCTTTAGCCGGTAGCGGGAAACCGGGGGCCGTACGATAAGCTAG 1189
consensus_9528#1 TAAGCTAGGTTAAGCTAG-GGATACACAAGGAGCTACGAACGGCTCG-AACTTTGACCGA 1132
consensus_9528#3 TAAGCTAGGTTAAGCTAGCGGATACACAAGGAGCTACGAACCGGTCGCAACTTTGACCAN 762
consensus_9528#2 ------------------------------------------------------------
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 GTTAAGCTAGGGATACACAAGGAGCTACGAACGGCTCGAACTTTGACCGATTGCGGTCCA 1249
consensus_9528#1 TTG-CGGTCCACCAAACAG-TGCTGCACTGTAGC-AAACGATC---GTTGGAAAGTGTGG 1186
consensus_9528#3 TTGGCGGTCCACCAAACAGGTGCTGCACTGTAGCCAAACGGACTCGGTTGGAAAANGTTG 822
consensus_9528#2 ------------------------------------------------------------
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 CCAAACAGTGCTGCACTGTAGCAAACGATCGTTGGAAAGTGTGGACACGGGTTTTCTGTA 1309
consensus_9528#1 ----ACACGGGT-TTTCTGTAC-----TTTTAAACGCAAATTACGTGGAAA--ATAAAAC 1234
consensus_9528#3 TGGCACACCGGCATCTCTACTCGTCAACTTTAAGAGCTAATTACGTGCACACATTAAAAC 882
consensus_9528#2 ------------------------------------------------------------
consensus_9528#4 ------------------------------------------------------------
consensus_9528#0 CTTTTAAACGCAAATTACGTGCAAAATAAAA----------------------------- 1340
consensus_9528#1 A------------------------- 1235
consensus_9528#3 CACGNAAAATCACCACACATNAACAC 908
consensus_9528#2 --------------------------
consensus_9528#4 --------------------------
consensus_9528#0 --------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||