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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1906 fasta sequence
[GAACAGTCGCCTCGGAAGCAGCTGGTGTAGCAGATTGTTCAAGGAGCAGTGTCGAGTTTTCTGTGCAAAAAGTGTATTACAACAAAGTGAGTGCAGAATGAACGTGTTAAAATCTCCACTGTGGCAACATTGGCTACGATCCAGCG-TGCTTCCGTGTGGGACAACTTCGAACAGACTGCTGAGTGCACAGCCCGCGGTCGAACACGTAGATCCGGAATGGTCCACGGCGAAACCGTACGAATCTATCCCCACTCCATCGTTTATGGAGATGGCCCGGATGTTTGGCAGCAAAGGTCGCTACGCAAATCTGGATCTGGTGGAGTTGCATTCCCGCATGTGGGAAGACTACGGTGATATCATTCGCTTTAAGGGAATGTTTGGTCGCCGTGATATCATTATGACGTACAGCCCACCTGACATTGAGAAGGTGTTCCGCAACGAGGGACAGTGGCCGATACGCCGTGGGTTCGATAGTTTTACGTACTACCGTACGCACGTACGACCAGATATCTTTAGCGAGACGGGCGGTCTAGTCACGGAACACGGTGAAAAGTGGCAGAAGGTGCGCACCATCGTAAACCCGGTAATGATGCAACCGAAAACAATTAAACTTTACGTCGATCAGGTGGATGAAATAGCGCGAGAGTTTATGACACTGGTAGCAGGCATGAGAGATGAGAAGAACGAGCTACCGAAGGACTTTGATCAGTGGCTTAATCGGTGGGCGCTTGAAACGATGGGTGTTCTGGCGCTGGACACTCGGTTTGGTGTGTTGAAGGATGAACAGACGGAGGAAGCCAAAAAGATCCTTGGACTTGTACGTAACATCTTCGAGCTAACGTATAAGTTGGACGTGG-AAATGTCGCTCTGGAAGTACATCAGTACACCATCCTATAGGAAAATGATGAGTGTCTTTGATGATCTAACAGCATTGATCATGGCCAAAATCGATGAAGCGAAGCAGCGTCTCGAGAAACAACCATCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCTGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAG-CGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACC-GGAACGTT-GGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAACTTCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGCTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGGAGAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTTCCAGTATTGAAGGCATTATATGAGCTCTACAGGGTGGATCAAAATAATTATTCAACTGCTAAAATACATCTGAAATAAAAGTTGACACGTCAGCTTAAAAACAGTTGCTTTAGGAAATAAAACATTTTCTGAAAACGAAAAAAAAAAAAA]
[+] EMBL CNS09BZE [GAACAGTCGCCTCGGAAGCAGCTGGTGTAGCAGATTGTTCAAGGAGCAGTGTCGAGTTTTCTGTGCAAAAAGTGTATTACAACAAAGTGAGTGCAGAATGAACGTGTTAAAATCTCCACTGTGGCAACATTGGCTACGATCCAGCGCTGCTTCCGTATGGGACAACTTCGAACAGACTGCTGAGTGCACAGGCCGCGGTCGAACACGTAGATCCGGAATGGTCCACGGCGAAACCGTACGAATCAATCCCCACTCCATCGTTTATGGAGATGACCCGGATGTTTGGCAACAAAGGTCGTTACGCAAATCTGGATCTGGTGGAGTTGCACTCCCGCATGTGGGAAGACTACGGTGATATCATTCGCTTTAAGGGAATGTTTGGTCGCCGTGATATCATTATGACGTACAGCCCACCTGACATTGAGAAGGTGTTCCGCAACGAGGGACAGTGGCCGATACGCCGTGGGTTCGATAGTTTTACGTACTACCGTACGCACGTACGACCAGATATCTTTAGCGAGACGGGCGGTCTAGTCACGGAACACGGTGAAAAGTGGCAGAAGGTGCGCACCATCGTAAACCCGGTAATGATGCAACCGAAAACAATTAAACTTTACGTCGATCAGG ]
[+] EMBL CNS090QA [ gcgTTCTGAGCAAAAAGTGTATTACAACAAAGTGAGTGCAGAATGAACGTGTTAAAATCTCCACTGTGGCAACATTGGCTACGATCCAGCG TGCTTCCGTGTGGGACAACTTCGAACAGACTGCTGAGTGCACAGCCCGCGGTCGAACACGTAGATCCGGAATGGTCCACGGCGAAACCGTACGAATCTATCCCCACTCCATCGTTTATGGAGATGGCCCGGATGTTTGGCAGCAAAGGTCGCTACGCAAATCTGGATCTGGTGGAGTTGCATTCCCGCAT ]
[+] EMBL AY176050 [ TTAAAATCTCCACTGTGGCAACATTGGCTACGATCCAGCG TGCTTCCGTGTGGGACAACTTCGAACAGACTGCTGAGTGCACAGCCCGCGGTCGAACACGTAGATCCGGAATGGTCCACGGCGAAACCGTACGAATCTATCCCCACTCCATCGTTTATGGAGATGGCCCGGATGTTTGGCAGCAAAGGTCGCTACGCAAATCTGGATCTGGTGGAGTTGCATTCCCGCATGTGGGAAGATTACGGTGATATCGTTCGCTTTAAGGGAATGTTTGGTCGCCGAGATATCATTATGACGTACAGCCCATCTGACATTGAGAAGGTGTTCCGCAACGAGGGACAGTGGCCGATACGCCGTGGGTTCGATAGTTTTACGTACTACCGTACGCACGTACGACCAGACATCTTTAGCGAGACGGGCGGTCTAGTCACGGAACACGGCGAAAAGTGGCAGAAGGTGCGCACCATCGTAAACCCGGTGATGATGCAACCGAAAACAATTAAACTTTACGTCGATCAGGTGGATGAAATAGCGCGAGAGTTTATGACACTGGTAGCAGGCATGAGAGATGAGAAGAACGAGCTACCGAAGGACTTTGATCAGTGGCTTAATCGGTGGGCGCTTGAAACGATGGGTGTTCTGGCGCTGGACACTCGGTTTGGTGTGTTGAAGGATGAACAGACGGAGGAAGCCAAAAAGATCCTTGGACTTGTACGTAACATCTTCGAGCTAACGTATAAGTTGGACGTGG AAATGTCGCTCTGGAAGTACATCAGTACACCATCCTATAGGAAGATGATGAGCGTCTTCGATGATCTGACAGCATTGATCATGGCCAAAATCGATGAAGCGAAGCAGCGTCTCGAGAAACAGCCTTCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCAGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAG CGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACC GGAACGTT GGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGTAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCTATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTTGAACTGCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGT ]
[+] EMBL CNS09G9V [ ATGACACTGGTAGCAGGCATGAGAGATGAGAAGAACGAGCTACCGAAGAACTTTGATCAGTGGCTTAATCGGTGGGCGCTTGAAACGATGGGTGTTCTGGCGCTGGACACTCGGTTTGGTGTGTTGAAGGATGAACAGACGGAGGAAGCCAAAAAGATCCTTGGACTTGTACGTAACATCTTCGAGCTAACGTATAAGTTGGACGTGG AAATGTCGCTCTGGAAGTACATCAGTACACCATCCTATAGGAAAATGATGAGTGTCTTTGATGATCTAACAGCATTGATCATGGCCAAAATCGATGAAGCG AG AGCGTCTCGAGAAACAACCATCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCTGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGC ]
[+] EMBL CNS09AXM [ AATCGGTGGGCGCTTGAAACGATGGGTGTTCTGGCGCTGGACACTCGGTTTGGTGTGTTGAAGGATGAACAGACGGAGGAAGCCAAAAAGATCCTTGGACTTGTACGTAACATCTTCGAGCTAACGTATAAGTTGGACGTGG AAATGTCGCTCTGGAAGTACATCAGTACACCATCCTATAGGAAAATGATGAGTGTCTTTGATGATCTAACAGCATTGATCATGGCCAAAATCGATGAAGCGAAG AGCGTCTCGAGAAACAACCATCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCTGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAGAAGA AAGTACTTCCGCCGAGCCTCGGAGTATCTACC GGAACGTT GGCTTTCCGAACGTCCAGCAGGTGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTCCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAAC ]
[+] EMBL CNS09H1G [ AATCGGTGGGCGCTTGAAACGATGGGTGTTCTGGCGCTGGACACTCGGTTTGGTGTGTTGAAGGATGAACAGACGGAGGAAGCCAAAAAGATCCTTGGACTTGTACGTAACATCTTCGAGCTAACGTATAAGTTGGACGTGGTAAATGTCGCTCTGGTAGTACATC ]
[+] EMBL BX622371 [ AATGTCGCTCTGGAAGTACATCAGTACACCATCCTATAGGAAAATGATGAGTGTCTTTGATGATCTAACAGCATTGATCATGGCCAAAATCGATGAAGCGAAGCAGCGTCTCGAGAAACAACCATCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCTGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAG CGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACC GGAACGTT GGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAACTTCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTNCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGC ]
[-] EMBL CNS090QB [ GGAAAAGCAGGCAAATCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAG CGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACC GGAACGTT GGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCCGGAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTTGAACTGCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGTTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGGAGAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTCCCAGTATTGAAGGCATTATATGAGCTGTACAGGGTGGATCAAAATAATTATTCATCTGCTAAAATACATCTGAAA ]
[-] EMBL CNS09BZF [ CCGGTCGGGACTTGGTCCTGCAGGGCTATTAAATTCCAAAGGGAACGGACATTGCCATGGGTACGGCGGTATTGCAGCGTAG TGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACC GGAACGTT GGCTTTCCGAACGCCCTGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAAGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAACTTCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAG TG GGAACTATGTTCTATATAACTGTGTTATCTGTGAAGGAGAACCCGAACAAATTGTTTTCCTACGACTTGTAACAAATTCCCAGTATTGAAGGCATTATATGAGCTGTACAGGGTGGATCAAAATAATTc ]
[-] EMBL CNS09AXN [ AAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAG CGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACCGGGAACGTT GGCTTTCCGAACGTCCAGCAGGTGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTCCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAACTTCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGCTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGG GAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTTCCAGTATTGAAGGCATTATATGAGCTCTACAGGGT ]
[-] EMBL AGA281462 [ ggATTGCAGCGTAG CGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACC GGAACGTT GGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAACTTCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGCTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGGGGAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTTCCAGTATTGAAGGCATTATATGAGCTCTACAGGGT GATTCAAATAAATATTCAACTGCTAAAATACATCTGAAATAAAAGTTGACACGTCAGCTTAAAAACAGTTGCTTTAGGAAATAAAACATTTTCTGAAAACGAAAAAAAAAAAAA]
[-] EMBL CNS09G9W [ AAGTACTTCCGCCGAGCCTCGGAGTTTCTACC GGAACGTTGGGCTTTCCGAACGTCCAGCAGGTGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTCGAACTTCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGCTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGGGGAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTTCCAGTATTGAAGGCATTATATGAGCTCTACAGGGT GATTCAAATAAATATTCAACTGCTAAAATAaaaaaaaaa ]
[+] EMBL BM648253 [ ccgCTGCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGCTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGGAGAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTCCCAGTATTGAAGGCATCATATGAGCTGTACAGGGTGGATCAAAATAATTATTCAACTACTAAAATACATCTGAAATAAAAGTTGACACGTCAGCTTAAAAACAGTTGCTTTAGGAAATAAAACATTTTCTG ]
[-] EMBL CNS09H1H [ TGGAACTACGATAAGCTGAACTTAAAGAAAGCGTTGATCAAAATTCCTGCCAATCCGCTGCAGTTCGAACTGCGGGATGTAGATCACTGAAACAGCTATGCTTTTTTATGTTCTACATAACTGTGTTATCTGTGAAGG GAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTTCCAGTATTGAAGGCATTATATGAGCTCTACAGGGT GATTCAAATAAATA ]
consensusID : consensus_9669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[GAATCCCCGNGGTTTGCTTAGATCACAAGCACGTTGCTGTGATCATGTTCTTGATATGCTTATTGCTGGAATTGAGTACGACATCATCCGGATCGACCGGAGTGCTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCTAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCTCCATTGACGGCGGAGAATATGCACAATCTACCTTATTTGAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCAGTAGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTACTGGACGGTATTTGCACGCGTAGTGAGAAGTACTTACCGCCGAGACCTCGGAGTATCTACCGGAACGTATGGCTTTCCGAACGCCCTGACAGATGTGACGAGTGCAAAGGATTCGAATCCCTATCATCTTCCTATACCGATANAGGCTTNTGGTGCACGAAGCTGTATACGGNTAAGCGGCTCGNNCATGATGNACTTCGGAGGATGATCAACGCCCGNNGCCTGNGCTGCCGGCACANGCTTCGCANACTCTCCGATCGCGAAACTAACGGNACATCAAAGCTGGCACCTTCAAAGCAAGGCGTNCGATCCAACCAATNCCCTNGCCCCAANTCCCGCATGACACGACGACACCTGCNNGGCATGTNANAATCNACTGGAAACACGNCGCGCACAACCANTGTACTCATACTAAACTAGNGATCAAACTNGTCGCAAAGGG]
[+] EMBL AL694835 [GAATCCCCGNGGTTTGCTTAGATCACAAGCACGTTGCTGTGATCATGTTCTTGATATGCTTATTGCTGGAATTGAGTACGACATCATCCGGATCGACCGGAGTGCTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCTAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCTCCATTGACGGCGGAGAATATGCACAATCTACCTTATTTGAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCAGTAGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTACTGGACGGTATTTGCACGCGTAGTGAGAAGTACTTACCGCCGAGACCTCGGAGTATCTACCGGAACGTATGGCTTTCCGAACGCCCTGACAGATGTGACGAGTGCAAAGGATTCGAATCCCTATCATCTTCCTATACCGATANAGGCTTNTGGTGCACGAAGCTGTATACGGNTAAGCGGCTCGNNCATGATGNACTTCGGAGGATGATCAACGCCCGNNGCCTGNGCTGCCGGCACANGCTTCGCANACTCTCCGATCGCGAAACTAACGGNACATCAAAGCTGGCACCTTCAAAGCAAGGCGTNCGATCCAACCAATNCCCTNGCCCCAANTCCCGCATGACACGACGACACCTGCNNGGCATGTNANAATCNACTGGAAACACGNCGCGCACAACCANTGTACTCATACTAAACTAGNGATCAAACTNGTCGCAAAGGG]
consensusID : consensus_9669#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 680 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCTTCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCAGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAGCGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACCGGAACGTTGGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCTATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTTGAACTGCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCG]
[+] EMBL BM653740 [CCGCCCACGCGTCCGCCCACGCGTCCGCTTCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCAGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCGCGGTATTGCAGCGTAGCGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACCGGAACGTTGGCTTTCCGAACGTCCAGCAGATGTGCCGAGTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCTATGATGGAGTTGGAGATGATTACCGCCCGGCTGGTGCGGCAGTTTGAACTGCGATGGAACTACGATAAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCG]
[+] EMBL BM640033 [ ccgCTCAGCCAATCAAAGCGTACTGGAGAAGCTGCTTAAGATCAACAAGCACGTTGCAGTGATCATGTCGCTTGATATGCTTATTGGGGGAATTGATACGACATCATCCGGATCGACCGGAGTGCTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCTAAGCTGCGTGAAGAGCTGCGCGCCATCTTGCCCAAAAAGGACTCTCCATTGACGGCGGAGAATATGCACAATCTACCATACTTGAGAGCTTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACTGATATTGCCATGGGCACAGCGGTATTGCAGCGTATTGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACCGGAACGTTGGCTTTCCAAACGCCCAGCAGATGTGCCGAGTGCAAAGGATT ]
[+] EMBL AGA283065 [ TGTCGCTTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCGACCGGAGTACTGTACTGTCTAGCGAAGAATCCGGAAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCATTGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCA ]
consensusID : consensus_9669#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence
[CCCAGGTTTCTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCTGACCGGAGTACTTGTACTGTCTACGAAGAAAAAATCCTGGAAAAGCAGGCAAGCTGCGTGAAGAGCTGCGTACATCTTGCCAAAAAGGACTCACCATTGACGGNGGAGAATATGCACAATCTAACTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTCTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCTGCGGTATTGCAGCTGTAGCGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACCGGAACGTTTGGCTTTCCTGAACGTCCAGCAGATGTGCCTGAGTTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAG]
[+] EMBL AL931580 [CCCAGGTTTCTGATATGCTTATTGCTGGAATTGATACGACATCATCCGGATCTGACCGGAGTACTTGTACTGTCTACGAAGAAAAAATCCTGGAAAAGCAGGCAAGCTGCGTGAAGAGCTGCGTACATCTTGCCAAAAAGGACTCACCATTGACGGNGGAGAATATGCACAATCTAACTTACCTTAGAGCCTGCATCAAGGAGGGTCTGCGGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTCTGGTCCTGCAGGGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCTGCGGTATTGCAGCTGTAGCGAGAAGTACTTCCGCCGAGCCTCGGAGTATCTACCGGAACGTTTGGCTTTCCTGAACGTCCAGCAGATGTGCCTGAGTTGCAAAGGATTCGAATCCCTTCATCTTCCTTCCGTTTGGCTTTTGGTGCACGAAGCTGTATCGGTAGGCGGCTCGCCATGATGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9669#0 GAACAGTCGCCTCGGAAGCAGCTGGTGTAGCAGATTGTTCAAGGAGCAGTGTCGAGTTTT 60
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 CTGTGCAAAAAGTGTATTACAACAAAGTGAGTGCAGAATGAACGTGTTAAAATCTCCACT 120
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTGGCAACATTGGCTACGATCCAGCGTGCTTCCGTGTGGGACAACTTCGAACAGACTGCT 180
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GAGTGCACAGCCCGCGGTCGAACACGTAGATCCGGAATGGTCCACGGCGAAACCGTACGA 240
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 ATCTATCCCCACTCCATCGTTTATGGAGATGGCCCGGATGTTTGGCAGCAAAGGTCGCTA 300
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 CGCAAATCTGGATCTGGTGGAGTTGCATTCCCGCATGTGGGAAGACTACGGTGATATCAT 360
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 TCGCTTTAAGGGAATGTTTGGTCGCCGTGATATCATTATGACGTACAGCCCACCTGACAT 420
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 TGAGAAGGTGTTCCGCAACGAGGGACAGTGGCCGATACGCCGTGGGTTCGATAGTTTTAC 480
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTACTACCGTACGCACGTACGACCAGATATCTTTAGCGAGACGGGCGGTCTAGTCACGGA 540
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 ACACGGTGAAAAGTGGCAGAAGGTGCGCACCATCGTAAACCCGGTAATGATGCAACCGAA 600
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AACAATTAAACTTTACGTCGATCAGGTGGATGAAATAGCGCGAGAGTTTATGACACTGGT 660
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AGCAGGCATGAGAGATGAGAAGAACGAGCTACCGAAGGACTTTGATCAGTGGCTTAATCG 720
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTGGGCGCTTGAAACGATGGGTGTTCTGGCGCTGGACACTCGGTTTGGTGTGTTGAAGGA 780
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 TGAACAGACGGAGGAAGCCAAAAAGATCCTTGGACTTGTACGTAACATCTTCGAGCTAAC 840
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTATAAGTTGGACGTGGAAATGTCGCTCTGGAAGTACATCAGTACACCATCCTATAGGAA 900
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AATGATGAGTGTCTTTGATGATCTAACAGCATTGATCATGGCCAAAATCGATGAAGCGAA 960
consensus_9669#2 ----------------------------------------------------CCGCCCAC 8
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GCAGCGTCTCGAGAAACAACCATCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCT 1020
consensus_9669#2 GCGTCCGCCCACGCGTCCGCT-TCAAACTCAGCCAATCAAAGCGTACTGGAGAAGCTGCT 67
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 -------------------------------------------GAATCCCCGNGGTTTGC 17
consensus_9669#0 TAAGATCAACAAGCACGTTGCTGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGA 1080
consensus_9669#2 TAAGATCAACAAGCACGTTGCAGTGATCATGTCGCTTGATATGCTTATTGCTGGAATTGA 127
consensus_9669#3 -------------------------CCCAGGTTTCT-GATATGCTTATTGCTGGAATTGA 34
consensus_9669#1 TTAGATCA-CAAGCACGTTGCTGTGATCATGTT-CTTGATATGCTTATTGCTGGAATTGA 75
** ** ** ***********************
consensus_9669#0 -TACGACATCATCCGGATC-GACCGGAGTACT-GTACTGTCTA----GCGAAGAATCCGG 1133
consensus_9669#2 -TACGACATCATCCGGATC-GACCGGAGTACT-GTACTGTCTA----GCGAAGAATCCGG 180
consensus_9669#3 -TACGACATCATCCGGATCTGACCGGAGTACTTGTACTGTCTACGAAGAAAAAATCCTGG 93
consensus_9669#1 GTACGACATCATCCGGATC-GACCGGAGTGCT-GTACTGTCTA----GCGAAGAATCCGG 129
****************** ********* ** ********** * ** * * **
consensus_9669#0 AAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCAT 1193
consensus_9669#2 AAAAGCAGGCAAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCACCAT 240
consensus_9669#3 AAAAGCAGGCAA-GCTGCGTGAAGAGCTGCGTAC-ATCTTGCC-AAAAAGGACTCACCAT 150
consensus_9669#1 AAAAGCAGGCTAAGCTGCGTGAAGAGCTGCGTACCATCTTGCCCAAAAAGGACTCTCCAT 189
********** * ********************* ******** *********** ****
consensus_9669#0 TGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGC 1253
consensus_9669#2 TGACGGCGGAGAATATGCACAATCTACCTTACCTTAGAGCCTGCATCAAGGAGGGTCTGC 300
consensus_9669#3 TGACGGNGGAGAATATGCACAATCTAACTTACCTTAGAGCCTGCATCAAGGAGGGTCTGC 210
consensus_9669#1 TGACGGCGGAGAATATGCACAATCTACCTTATTTGAGAGCCTGCATCAAGGAGGGTCTGC 249
****** ******************* **** * *************************
consensus_9669#0 GGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACT-TGGTCCTGCAG 1312
consensus_9669#2 GGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACT-TGGTCCTGCAG 359
consensus_9669#3 GGATGTATCAACCCGTCGCTGGAAACATGCGTGCCGCCGGTCGGGACTCTGGTCCTGCAG 270
consensus_9669#1 GGATGTATCAACCAGTAGCTGGAAACATGCGTGCCGCCGGTCGGGACT-TGGTCCTGCAG 308
************* ** ******************************* ***********
consensus_9669#0 GGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCC--GCGGTATT-GCAGC-G 1368
consensus_9669#2 GGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCC--GCGGTATT-GCAGC-G 415
consensus_9669#3 GGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTTCCT-GCGGTATT-GCAGCTG 328
consensus_9669#1 GGCTATCAAATTCCAAAGGGAACGGACATTGCCATGGGTACTGGACGGTATTTGCACGCG 368
*************************************** * ******* *** *
consensus_9669#0 TAGCGAGAAGTACTT-CCGCCGAG-CCTCGGAGTATCTACCGGAACGTT-GGCTTTCC-G 1424
consensus_9669#2 TAGCGAGAAGTACTT-CCGCCGAG-CCTCGGAGTATCTACCGGAACGTT-GGCTTTCC-G 471
consensus_9669#3 TAGCGAGAAGTACTT-CCGCCGAG-CCTCGGAGTATCTACCGGAACGTTTGGCTTTCCTG 386
consensus_9669#1 TAGTGAGAAGTACTTACCGCCGAGACCTCGGAGTATCTACCGGAACGTATGGCTTTCC-G 427
*** *********** ******** *********************** ******** *
consensus_9669#0 AACGTCCAG-CAGATGTGCC-GAGT-GCAAAGGATTCGAATCCCT-TCATCTTCCTT--C 1478
consensus_9669#2 AACGTCCAG-CAGATGTGCC-GAGT-GCAAAGGATTCGAATCCCT-TCATCTTCCTT--C 525
consensus_9669#3 AACGTCCAG-CAGATGTGCCTGAGTTGCAAAGGATTCGAATCCCT-TCATCTTCCTT--C 442
consensus_9669#1 AACGCCCTGACAGATGTGAC-GAGT-GCAAAGGATTCGAATCCCTATCATCTTCCTATAC 485
**** ** * ******** * **** ******************* ********** *
consensus_9669#0 CGTTTG--GCTTT-GGTGCACGAAGCTGTATC--GGTAGGCGGCTCGCC-ATGATGGAGT 1532
consensus_9669#2 CGTTTG--GCTTT-GGTGCACGAAGCTGTATC--GGTAGGCGGCTCGCT-ATGATGGAGT 579
consensus_9669#3 CGTTTG--GCTTTTGGTGCACGAAGCTGTATC--GGTAGGCGGCTCGCC-ATGATGGAG- 496
consensus_9669#1 CGATANAGGCTTNTGGTGCACGAAGCTGTATACGGNTAAGCGGCTCGNNCATGATGNACT 545
** * **** ***************** * ** ******** ****** *
consensus_9669#0 T--GGAGATGATTACCGCCCGGC---TGGTGCGGCAGTTCGAACTTCGATGGAACTACGA 1587
consensus_9669#2 T--GGAGATGATTACCGCCCGGC---TGGTGCGGCAGTTTGAACTGCGATGGAACTACGA 634
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 TCGGAGGATGATCAACGCCCGNNGCCTGNGCTGCCGGCACANGCTTCGCANACTCTCCGA 605
consensus_9669#0 T----AAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCGCTGCAGTTCG 1643
consensus_9669#2 T----AAGCTGCACTTCAAGCAAGCGTTGATCAACATTCCTGCCAATCCG---------- 680
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 TCGCGAAACTA-ACGGNACATCAAAGCTGGC--ACCTTCAAAGCAAGGCG-TNCGATCCA 661
consensus_9669#0 AACTGCGGGATGTAGATCACTGAAACA-GCTATGCTTTTTTATGTTCTACATAACTGTGT 1702
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ACCAATNCCCTNGCCCCAANTCCCGCATGACACGACGACACCTGCNNGGCATGTNANAAT 721
consensus_9669#0 TATCTGTGAAGGAGAACCCGAACAAACTGTCTTCCTACGACTTGTAACAAATTTCCAGTA 1762
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 CNACTG-GAAACACGNCGCGCACAACCANTGTACTCATACTAAACTAGNGATCAAACTNG 780
consensus_9669#0 TTGAAGGCATTATATGAGCTCTACAGGGTGGATCAAAATAATTATTCAACTGCTAAAATA 1822
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 TCGCAAAGGG-------------------------------------------------- 790
consensus_9669#0 CATCTGAAATAAAAGTTGACACGTCAGCTTAAAAACAGTTGCTTTAGGAAATAAAACATT 1882
consensus_9669#2 ------------------------------------------------------------
consensus_9669#3 ------------------------------------------------------------
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 TTCTGAAAACGAAAAAAAAAAAAA 1906
consensus_9669#2 ------------------------
consensus_9669#3 ------------------------
consensus_9669#1 ------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||