cluster # 968

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Anopheles gambiae
cluster # 968 cluster # 968 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_968#0 length = 798 sequences # 1

consensus_968#1 length = 591 sequences # 1

consensusID : consensus_968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 798
fasta sequence

                              [AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCTTGATATGCTTAAGCAAGGTAAAAGCTACGCTGCCGTGGGTCGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAATAGAGCCATCATAACGATGGAAGCAGAATTAGTTTCATGGATAAAGGACTGCAGGCAAAAACATGTTCCGCTAACTACCAACGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAAAATTATCTGATAGTATTAGAACCGTGACAGACACAACAGCATCGCGCCCGGCCAGGTTCAATGCTAGCAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTATACGGAGAGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACACTGGATNGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAGCAAAAGAACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGANGGNAGTTAGTGAACGGG]

[+] EMBL BX468258             [AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCTTGATATGCTTAAGCAAGGTAAAAGCTACGCTGCCGTGGGTCGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAATAGAGCCATCATAACGATGGAAGCAGAATTAGTTTCATGGATAAAGGACTGCAGGCAAAAACATGTTCCGCTAACTACCAACGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAAAATTATCTGATAGTATTAGAACCGTGACAGACACAACAGCATCGCGCCCGGCCAGGTTCAATGCTAGCAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTATACGGAGAGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACACTGGATNGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAGCAAAAGAACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGANGGNAGTTAGTGAACGGG]




>consensus_968#0
AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCAT
CCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTA
ATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATC
GCGCTAGCGAGAAGCCCAAATGCTTGATATGCTTAAGCAAGGTAAAAGCTACGCTGCCGT
GGGTCGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAA
CATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCG
CAATAGAGCCATCATAACGATGGAAGCAGAATTAGTTTCATGGATAAAGGACTGCAGGCA
AAAACATGTTCCGCTAACTACCAACGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAA
AATTATCTGATAGTATTAGAACCGTGACAGACACAACAGCATCGCGCCCGGCCAGGTTCA
ATGCTAGCAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTAT
ACGGAGAGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACA
CTGGATNGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAG
CAAAAGAACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGA
NGGNAGTTAGTGAACGGG

consensusID : consensus_968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [CAAGAATCGCCACGAGGGTNACAAACATGAATCAAAAATATCNATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAAACTTCTCGATATGCTTAAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATAACGATGGAAGCAGAAGTTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCGCTAACTACCAAGCGTAATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGATAGTATTAGAACCGTGACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAGGCANTGG]

[+] EMBL BX469263             [CAAGAATCGCCACGAGGGTNACAAACATGAATCAAAAATATCNATCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGCCCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAAACTTCTCGATATGCTTAAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAATCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATAACGATGGAAGCAGAAGTTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCGCTAACTACCAAGCGTAATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGATAGTATTAGAACCGTGACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAGGCANTGG]




>consensus_968#1
CAAGAATCGCCACGAGGGTNACAAACATGAATCAAAAATATCNATCCACTGATTTAAATT
GTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTTAATACTTTCGTTTGGA
GTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCATCGCGCTAGCGAGAAGC
CCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAAACTTCTCGATATGCTT
AAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAATCAACGAGTCTTCAGT
ACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTGCAGTTTCCGTGAGCAA
AACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATAACGATGGAAGCAGAAG
TTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCGCTAACTACCAAGCGTA
ATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGATAGTATTAGAACCGTG
ACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAGGCANTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_968#0      AAGGCAGAATCCGCACGATGTTAACAATACATCATTACAANCATGAATCAAAAATATCA- 59
consensus_968#1      ---------------CAAGAATCGCCACG-AGGGTNACAAACATGAATCAAAAATATCNA 44
                                    * *   *  * *   *   * **** *****************  

consensus_968#0      TCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTT 119
consensus_968#1      TCCACTGATTTAAATTGTGGAATACAAATTCCATCTATAAAATACTTCAACTGTGCAGTT 104
                     ************************************************************

consensus_968#0      AATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCAT 179
consensus_968#1      AATACTTTCGTTTGGAGTAGTATTATGCTGAACGAAAAGTTATCTTCAACGGCTCTCCAT 164
                     ************************************************************

consensus_968#0      CGCGCTAGCGAGAAGCCCAAATGC------------------------------------ 203
consensus_968#1      CGCGCTAGCGAGAAGCCCAAATGCCAAAGGAACAATGTTTACAATAGCTGAAAAAATTAA 224
                     ************************                                    

consensus_968#0      -----TTGATATGCTTAAGCA-AGGTAAAAGCTACGCTGCCGTGGGTCGGTGCTACGGAA 257
consensus_968#1      ACTTCTCGATATGCTTAAGCACAGGTAAAAGCTACGCTGCCGTGGGTTGGTGCTACGGAA 284
                          * ************** ************************* ************

consensus_968#0      TCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTG 317
consensus_968#1      TCAACGAGTCTTCAGTACGCTACATTAAAAAGGATGAAATAAACATAAGAGCGACGGCTG 344
                     ************************************************************

consensus_968#0      CAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAA-TAGAGCCATCATA 376
consensus_968#1      CAGTTTCCGTGAGCAAAACAACAAAGCGTATAGTAACGCCTCGCAAGTAGAGCCATCATA 404
                     ********************************************** *************

consensus_968#0      ACGATGGAAGCAGAA-TTAGTTTCATGGA-TAAAGGACTGCAGGCAA-AAACATGTTCCG 433
consensus_968#1      ACGATGGAAGCAGAAGTTAGTTTCATGGACTAAAGGACTGCAGGCAACAAACATGTTCCG 464
                     *************** ************* ***************** ************

consensus_968#0      CTAACTACCAA-CGTAATTTGTAGCAAAGCAAAAAACGATTTTCCAAAAA--TTATCTGA 490
consensus_968#1      CTAACTACCAAGCGTAATTTGTAGCAAGAGCAAAAACGATTTTCCAANAAAGTTATCTGA 524
                     *********** ***************    **************** **  ********

consensus_968#0      TAGTATTAGAACCGTGACAG-ACACAA-CAGCATCGCGCCCGGCCAGGTTCAA-TGCTAG 547
consensus_968#1      TAGTATTAGAACCGTGACAGGACACAAGCAGCATCGCGCCCGGCCAGGTTCAAGTGCTAG 584
                     ******************** ****** ************************* ******

consensus_968#0      -CAATGGATGGTACGAGAAGTTCCAGAAACGACACGGATTGCGGAGTATTCTATACGGAG 606
consensus_968#1      GCANTGG----------------------------------------------------- 591
                      ** ***                                                     

consensus_968#0      AGCCAAGCCTCTTCCCCATACAATTANNACTTCAATGGCGAACACGGACACACACTGGAT 666
consensus_968#1      ------------------------------------------------------------
                                                                                 

consensus_968#0      NGCGGAAATTGGAATTCCCCTTTAACCGGGCCAAGGAAGGCAGGTCCCAGGGAGCAAAAG 726
consensus_968#1      ------------------------------------------------------------
                                                                                 

consensus_968#0      AACAGAACCAATGTGGTCGCCTNTCNANANGGAANAGCCGGGTTTACNGAAAGANGGNAG 786
consensus_968#1      ------------------------------------------------------------
                                                                                 

consensus_968#0      TTAGTGAACGGG 798
consensus_968#1      ------------