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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1329 fasta sequence
[CATAAAGCGCATGAAAATGATTAACGCGTTTATTACATTCTACGTTCCTTCCTACATCCAAGTTGCATATGGATTACGACTCCGAACGACACGAACAAAGAACTTGTACGATTACCGTGGGTTTTTCTCGGTCACCCGATGTTTAAGTATCAGAGTGCGATTGGCAATGCATATCACATGTTAACATCCGAAATTTGAGTGGTTGTTTAATTTAACGCAGAACTTCCTACTACAACGGACTACCTCAATGATTTAGGCTTTGAATAATATCCGAAATTTTAGTGGTTGTTTGAG-GGAATTAGAATAGAGGGGTGCC-ACTTTCGCCGCACA-GCTTGCATGA-TGGAGCTGACGCTGTATAGCCGCATCGCATCCACAATGGCACTGATGCTATAGTGACATACCTAATCCACAATGGCGTTAATGCAATTACTGGTCACTATCCGCTAAGGGGCTGATGCTGTATCAGTTTACCTTATTCACAATGGTGCAAGGTTTTATACTAGATGTTACATCCGAAATTTTAGTGGTTGTTTAAAAGATCTTTTC-A-GCCTGAACGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGCTGCTGAGACTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACTGCATCTCTTTCGCTCTCCCGATTGCGATCCACT-CCTATGTGGAAATCGCGATGACTTATATCCACACA---CACACACACTGATGCGCATGTATGAATATGAAGTGCTGTGGTGTTGGTGAAGTCGTTAACCATGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATTAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGACGGCCGCT--AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC-TTTGCCGCGCACGTTTATCACCAGACGGC-AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA-CGCTACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCCGGGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGTACGCACCAACCGCTCTGCTTCAC-CGGCC-CGG]
[+] EMBL CNS08NK4 [CATAAAGCGCATGAAAATGATTAACGCGTTTATTACATTCTACGTTCCTTCCTACATCCAAGTTGCATATGGATTACGACTCCGAACGACACGAACAAAGAACTTGTACGATTACCGTGGGTTTTTCTCGGTCACCCGATGTTTAAGTATCAGAGTGCGATTGGCAATGCATATCACATGTTAACATCCGAAATTTGAGTGGTTGTTTAATTTAACGCAGAACTTCCTACTACAACGGACTACCTCAATGATTTAGGCTTTGAATAATATCCGAAATTTTAGTGGTTGTTTGAG GGAATTAGAATAGAGGGGTGCC ACTTTCGCCGCACA GCTTGCATGA TGGAGCTGACGCTGTATAGCCGCATCGCATCCACAATGGCACTGATGCTATAGTGACATACCTAATCCACAATGGCGTTAATGCAATTACTGGTCACTATCCGCTAAGGGGCTGATGCTGTATCAGTTTACCTTATTCACAATGGTGCAAGGTTTTATACTAGATGTTACATCCGAAATTTTAGTGGTTGTTTAAAAGATCTTTTC A GCCTGAACGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGCTGCTGAGACTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACTGCATCTCTTTCGCTCTCCCGATTGCGATCCACT CCTATGTGGAAATCGCGATGACTTATATCCACACA CACACACACTGATGCGCATGTATGAATATGAAGTGCCGTGGTGTTGGTGAAGTCGTTAACC TGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACT AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAA ]
[+] EMBL CNS08MCG [ AGCGCATGAAAATGATTAACGCGTTTATTACATTCTACGTTCCTTCCTACATCCAAATTACATTTGGATTACGA TCCCAACTACACGAACAAAGAACTTGTACGATTACCGTGGGTTTTTCTCGGTTACCCGATGTTTAAGTATCAGAGTGCGATTGGCAATGCATATCACATGTTAACATCCGAAATTTGAGTGGTTGTTTAATTTAACACGAAACTTCCTACTACAACGGACTACCTCAATGATTTAGGCTTTGAATAATATCCGAAATTTTAGTGGTTGTTTGAGCGGAATTAGAATAGAGGGGTGCC ACTTTCGCCGCACATGCTTGCATGA TGGAGCTGACGCTGTATAGC ]
[+] EMBL CNS08M4U [ ATTAAAATGATTAACGCGTTTATTACATTCTACGTTCCTTCCTACATCCAAGTTGCATATGGATTACGACTCCGAACGACACGAACAAAGAACTTGTACGATTACCGTGGGTTTTTCTCGGTCACCCGATGTTTAAGTATCAGAGTGCGATTGGCAATGCATATCACATGTTAACATCCGAAATTTGAGTGGTTGTTTAATTTAACGCAGAACTTCCTACTACAACGGACTACCTCAATGATTTAGGCTTTGAATAATATCCGAAATTTTAGTGGTTGTTTGAG GGAATTAGAATAGAGGGGTGCC ACTTTCGCCGCACA GCTTGCATGA TGGAGCTGACGCTGTATAGCCGCATCGCATCCACAATGGCACTGATGCTATAGTGACATACCTAATCCACAATGGCGTTAATGCAATTACTGGTCACTATCCGCTAAGGGGCTGATGCTGTATCAGTTTACCTTATTCACAATGGTGCAAGGTTTTATACTAGTTTTTACATCCGAAATTTTAGTGGTTGTTTAAAAGATCTTTTCGACGCCTGAACGT ]
[-] EMBL BX609269 [ ACAAAGAACTTGTACGATTACCGTGGGTTTTTCTCGGTCACCCGATGTTTAAGTATCAGAGTGCGATTGGCAATGCATATCACATGTTAACATCCGAAATTTGAGTGGTTGTTTAATTTAACGCAGAACTTCCTACTACAACGGACTACCTCAATGATTTAGGCTTTGAATAATATCCGAAATTTTAGTGGTTGTTTGAG GGAATTAGAATAGAGGGGTGCC ACTTTCGCCGCACA GCTTGCATGA TGGAGCTGACGCTGTATAGCCGCATCGCATCCACAATGGCACTGATGCTATAGTGACATACCTAATCCACAATGGCGTTAATGCAATTACTGGTCACTATCCGCTAAGGGGCTGATGCTGTATCAGTTTACCTTATTCACAATGGTGCAAGGTTTTATACTAGATGTTACATCCGAAATTTTAGTGGTTGTTTAAAAGATCTTTTC A GCCTGAACGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGCTGCTGAGACTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACTGCATCTCTTTCGCTCTCCCGATTGCGATCCACT CCTATGTGGAAATCGCGATGACTTATATCCACACA CACACACACTGATGCGC ]
[-] EMBL CNS08NK3 [ GGGTGCCAACTTTCGCCGCACA GCTTGCATGATTGGAG TGACGCTGTATAGCCGCATCGCATCCACAATGGCACTGATGCTATAGTGACATACCTAATCCACAATGGCGTTAATGCAATTACTGGTCACTATCCGCTAAGGGGCTGATGCTGTATCAGTTTACCTTATTCACAATGGTGCAAGGTTTTATACTAGATGTTACATCCGAAATTTTAGTGGTTGTTTAAAAGATCTTTTC A GCCTGAACGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGCTGCTGAGACTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACTGCATCTCTTTCGCTCTCCCGATTGCGATCCACT CCTATGTGGAAATCGCGATGACTTATATCCACACA CACACACACTGATGCGCATGTATGAATATGAAGTGCCGTGGTGTTGGTGAAGTCGTTAACC TGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACT AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTACCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CG TACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACCCCCGGGCGCCCGC ]
[+] EMBL CNS08OAV [ gCTTTCCATGCCATCGGCCTGAAGAAAAAAGAGCTGCTGAGACTTAATGCTGAAAAAGCCGAATAGTCGGTCTTTTACTGCATCTCTTTCGCTCTCCCGATTGCGATTTACT CCTATGTGAAAATCGCGATGATTTATA CC CA CACACACACTGATGCGCATGTATGAATATAAAGTGCTGCGGTGTTGGTGAAGTCGTTAACCATGGTCTTCACACCGCGTACCGGCGTTTCTCCGCCGCCAG ]
[-] EMBL BM594351 [ CTTTTACTGCATCTCTTTCGCTCTCCCGATTGCGATCCACTCCCAATGTGGAAATCGCGATGATTTATACCCACACACACCACACACACTGATGCGCATGTATGAATATTAAGTGCTGTGGTGTTGGTGAAGTCGTTAACCATGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACCGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATTAGGCGACGCGATGGGTCGTTTCTTTAAGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGACGGCCGCT AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCC GGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGTACGCACCAACCGCTCTGCTTCAC CGG ]
[-] EMBL BM593990 [ CCGATTGCGATCCACT CCAATGTGGAAATCGCGATGATTTATACCCACACA CACACACACTGATGCGCATGTATGAATATAAAGTGCTGTGGTGTTGGTGAAGTCGTTAACCATGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACCGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATTAGGCGACGCGATGGGTCGTTTCCTTAAGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCGAAGACTGACAGCCGCTAAAATTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACCGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCC GGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGTACGCACCAACCGCTCTGCTTCAC ACACC CGG]
[-] EMBL BM579544 [ GCGATCCACT CCTATGTGGAAATCGCGATGACTTATA CC CA CACACACACTGATGCGCACGTATGAATATGAAGTGCTGTGGTGTTGGTGAAGTCGTTAACCATGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAACACCGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATAGGGAATTATGCGACGCGATGGATCGTTTCCTTCCGGTGGTCCATGCTGA ACGCCAATGAGAACGGTCATCATTTTCTAATCGAAGACTGACGGCCGCT AGTTCCGTGCTGGTCAAAACGGTTCGGACACACGCACTGATTTTCTAACCTTGCAGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTTTCACCAGACGGC AGCCATTTTGTTACAACAACCGTGCCGTTGACCGCATCCGAGGGCCAACTAAACTGCGATGCCGGTTTGCCACACGCCAGCCA AGCTACGCACAGCTGCCACTACTGCGGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCCGGGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGCACGTACCAACCGCTCTGTTTCAC CGG ]
[-] EMBL BM614382 [ CGCGATGACTTATATCCACACA CACACACACTGATGCGCATGTATGAATATGAAGTGCCGTGGTGTTGGTGAAGTCGTTAACC TGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACT AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTACCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACCCCCGGGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGTACGCACCAACCGCTCTGCgg ]
[-] EMBL BX611220 [ TGTTGGTGAAGTCGTTAACC TGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACT AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTACCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACTG ]
[-] EMBL BM605840 [ AGTCGTTAACCATGGTCTTCACACCGCGTACCGGCGTGTCTCCGCCGCCAGCTTCTAATACCGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATTAGGCGACGCGATGGGTCGTTTCCTTAAGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCGAAGACTGACAGCCGCTAAAATTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACCGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCC GGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGTACGCACCAACCGCTCTGC CCACGCGTCCGCGG]
[-] EMBL BM630618 [ CACGCGGTTGCGACGCACGTTGATGGGGAATTAGGCGACGCGATGGGTCGTTTCTTTAAGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGACGGCCGCT AGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCC GGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGTACGCACCAACCGCTCTGCTTCAC ACACC CGG]
[-] EMBL BM597558 [ cgAAGACTGACGGCCGCT AGTTCCGTGCTGGTCAAAACGGTTCGGACACACGCACTGATTTTCTAACCTTGCAGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTTTCACCAGACGGC AGCCATTTTGTTACAACAACCGTGCCGTTGACCGCATCCGAGGGCCAACTAAACTGCGATGCCGGTTTGCCACACGCCAGCCA AGCTACGCACAGCTGCCACTACTGCGGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCCGGGCGCCCGCGCGGCAATGCTCGCAGAAACTCACGCACGTACCAACCGCTCTGTTTCAC CGG ]
[-] EMBL CNS08MCF [ AGGCCGACATGACGCCATCCACGGAAATAACGCCAACGCATTTGCCGCGCACGTTTATCACCAGACGGCAAGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCAGCG TACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCCGGGAGCCCGCGCGGCAATGCTCGCAGACACTCACGCACGCACCAAGCGCTCTctc ]
[-] EMBL CNS08OAU [ ATCCACGGAAATAACGCCAACGC TTTGCCGCGCACGTTTATCACCAGACGGC AGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA C CTACGCACAG TGCCGCTACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACACCCGGGAGCCCGCGCGGCAATGCTCGCAGATACTCACGCACGCACCAAGCGCTCTGCTTCACacacggg ]
consensusID : consensus_9698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[CGCACTCCGCATGTCCCACCTANTGGGCACTTGATTGCTAATACGNTGACAAGTACGTTAAANTCCAAGCAACTGGCCGTTAAATGCANACTTACCTGGGTCCACCTACTCCCGTNTAAACTGGGCTCTGANTNGCTTGTATTCAAGTTTACCCGTTAGTTCGANCAATGGTGNAAGGTTTTATACGTAGATGTTACATTCGCGAAACTTTTAGTGGTTTGCTTTAAAAGATCTTTTCAGCCTGAACTGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGGCTGGCTGAGACTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACCTGCATCTCTTTCGCTCTCCCGATTGCGATCCACTCCTACTCGTGGAAATCGCGATCGACTTATATCCACACACACACACACTGATGCGCATGTATGAATATGAAGTGCCGTGCTGCTTGGTGAAGTCGTTAACCTGGTCTTCACACCGCGTACCCGGCGTGTCCTCCGCCGCCAGCTTCTAATACCAGGGAACATGANCCGCTTCAGCACCGAGCAGAGAGCAAGCCACGGCGGTTGGACGGCACGTTGGATGGGGAAGTAAGGCGAGCGCGATGGGNCGTTTCCGTTACCGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACTAGTTCCATGCTGGTAAAGCCGTTCGACACACGCACTAATTCCCTCGNCCGATCTGC]
[-] EMBL BX466316 [CGCACTCCGCATGTCCCACCTANTGGGCACTTGATTGCTAATACGNTGACAAGTACGTTAAANTCCAAGCAACTGGCCGTTAAATGCANACTTACCTGGGTCCACCTACTCCCGTNTAAACTGGGCTCTGANTNGCTTGTATTCAAGTTTACCCGTTAGTTCGANCAATGGTGNAAGGTTTTATACGTAGATGTTACATTCGCGAAACTTTTAGTGGTTTGCTTTAAAAGATCTTTTCAGCCTGAACTGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGGCTGGCTGAGACTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACCTGCATCTCTTTCGCTCTCCCGATTGCGATCCACTCCTACTCGTGGAAATCGCGATCGACTTATATCCACACACACACACACTGATGCGCATGTATGAATATGAAGTGCCGTGCTGCTTGGTGAAGTCGTTAACCTGGTCTTCACACCGCGTACCCGGCGTGTCCTCCGCCGCCAGCTTCTAATACCAGGGAACATGANCCGCTTCAGCACCGAGCAGAGAGCAAGCCACGGCGGTTGGACGGCACGTTGGATGGGGAAGTAAGGCGAGCGCGATGGGNCGTTTCCGTTACCGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACTAGTTCCATGCTGGTAAAGCCGTTCGACACACGCACTAATTCCCTCGNCCGATCTGC]
consensusID : consensus_9698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[AATTCCCGGATNTGAACCTTAATATCCAACACAACACAACCACACCTGAAGGCCGCCATGGTATGGAATACTGAAAGTTCCCCGTGGTTTTGGTGAAGTCGTTTANCCCTGGTTCCTTTCACACCGGCGTACCCNGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACTAGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGCTTTACCGCGCACGTTTATCACCAGACGGCAGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA-CGCTACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACCCCCGGGCGCCCGCGCGGCAATGCTCGCAGAAAGCTCACGTACGCACCAACCGCCCATACGTGCCGATTCTGCT]
[-] EMBL BX467551 [AATTCCCGGATNTGAACCTTAATATCCAACACAACACAACCACACCTGAAGGCCGCCATGGTATGGAATACTGAAAGTTCCCCGTGGTTTTGGTGAAGTCGTTTANCCCTGGTTCCTTTCACACCGGCGTACCCNGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATGAGCCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACTAGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGCTTTACCGCGCACGTTTATCACCAGACGGCAGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCA CGCTACGCACAGCTGCCGCCACTGCAGTAGCAACGCCCTTCCAGCAACAACCGGGGGTGCTACCGGGAGACACCCCCGGGCGCCCGCGCGGCAATGCTCGCAGAAAGCTCACGTACGCACCAACCGCCCATACGTGCCGATTCTGCT]
[-] EMBL CNS08M4T [ ccGCTTCTATTACCGGGAACATGAACCGCTTCAGCACGAGCAGAGACAAGCCACGCGGTTGCGACGCACGTTGATGGGGAATAAGGCGACGCGATGGGTCGTTT CTTACGGTGGTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACTAGTTCCATGCTGGTTAAACCGGTTCGGACACACGCACTGATTTTCTAACCTTGCGGCAGGCCGACATGACGCCATCCACGGAAATAACGCCAACGCTTTACCGCGCACGTTTATCACCAGACGGCAGCCATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCCGGTTTGCCACACGCCAGCCATCG TACGCACAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9698#0 CATAAAGCGCATGAAAATGATTAACGCGTTTATTACATTCTACGTTCCTTCCTACATCCA 60
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 AGTTGCATATGGATTACGACTCCGAACGACACGAACAAAGAACTTGTACGATTACCGTGG 120
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 GTTTTTCTCGGTCACCCGATGTTTAAGTATCAGAGTGCGATTGGCAATGCATATCACATG 180
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 TTAACATCCGAAATTTGAGTGGTTGTTTAATTTAACGCAGAACTTCCTACTACAACGGAC 240
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 TACCTCAATGATTTAGGCTTTGAATAATATCCGAAATTTTAGTGGTTGTTTGAGGGAATT 300
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 AGAATAGAGGGGTGCCACTTTCGCCGCACAGCTTGCATGATGGAGCTGACGCTGTATAGC 360
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 CGCATCGCATCCACAATGGCACTGATGCTATAGTGACATACCTAATCCACAATGGCGTTA 420
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 ATGCAATTACTGGTCACTATCCGCTAAGGGGCTGATGCTGTATCAGTTTACCTTATTCAC 480
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 AATGGTGCAAGGTTTTATACTAGATGTTACATCCGAAATTTTAGTGGTTGTTTAAAAGAT 540
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 CTTTTCAGCCTGAACGTCTTTCCATGCGATCGGTCTGAAGAAAGAAGAGCTGCTGAGACT 600
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 ------------------------------------------------------------
consensus_9698#0 TAGTGCTGAAAAAGCCGAATAGTCGGTCTTTTACTGCATCTCTTTCGCTCTCCCGATTGC 660
consensus_9698#2 ------------------------------------------------------------
consensus_9698#1 -------------------------CGCACTCCGCATGTCCCACCTANTGGGCACTTGAT 35
consensus_9698#0 GATCCACTCCTATGTGGAAATCGCGATGACTTATATCCACACACACACACACTGATGCG- 719
consensus_9698#2 ----AATTCCCGGATNTGAACCTTAATATCCAACA-CAACACAACCACACCTGAAGGCCG 55
consensus_9698#1 TGCTAATACGNTGACAAGTACGTTAAANTCCAAG--CAACTGGCCGTTAAATGCANACTT 93
* * * * * * * ** * * *
consensus_9698#0 -CATG-TATG-AATATGAAGTGCT----GTGGTGTTGGTGAAGTCGTT-AACCATGGTC- 770
consensus_9698#2 CCATGGTATGGAATACTGAAAGTTCCCCGTGGTTTTGGTGAAGTCGTTTANCCCTGGTTC 115
consensus_9698#1 ACCTGGGTCCACCTACTCCCGTNTAAACTGGGCTCTGANTNGCTTGT--ATTCAAGTTTA 151
* ** ** * ** ** * ** * * * *
consensus_9698#0 --T-TCACACCG-CGTACC--GGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATG 824
consensus_9698#2 CTT-TCACACCGGCGTACCCNGGCGTGTCTCCGCCGCCAGCTTCTAATACAGGGAACATG 174
consensus_9698#1 CCCGTTAGTTCGANCAATGGTGNAAGGTTTTATACGTAGATGTTACATTCGCGAAACTTT 211
* * ** * * ** * ** * ** * * *** *
consensus_9698#0 AGCCGCTTCAGCACGAGCAGAGA----CAAGCCACGCGGTTGCGACGCACG-TTGATGGG 879
consensus_9698#2 AGCCGCTTCAGCACGAGCAGAGA----CAAGCCACGCGGTTGCGACGCACG-TTGATGGG 229
consensus_9698#1 TAGTGGTTT-GCTTTAAAAGATCTTTTCAGCCTGAACTGTCTTTCCATGCGATCGGTCTG 270
* ** ** * *** ** * * ** * ** * * * *
consensus_9698#0 GAATTAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAG 939
consensus_9698#2 GAATAAGGCGACGCGATGGGTCGTTTCCTTACGGTGGTCCATGCTGAACACGCCAATTAG 289
consensus_9698#1 AAGAAAGAAGAGGC--TGGCTGAGA--CTTAGTGCTGAAAAAGCCGAATAGTCGGTCTTT 326
* ** ** ** *** * **** * * * ** *** * * *
consensus_9698#0 AACGGCGATCATTTTCTAATCCAAGACTGACGGCCGCTAGTTC-CATGCTGGTTA-AACC 997
consensus_9698#2 AACGGCGATCATTTTCTAATCCAAGACTGAGGGCCACTAGTTC-CATGCTGGTTA-AACC 347
consensus_9698#1 TACCTGCATCTCTTTCGCTCTCCCGATTGCGATCCACTCCTACTCGTGGAAATCGCGATC 386
** *** **** * ** ** ** ** * * * ** * * *
consensus_9698#0 GGTTCGGACACACGCACTGATTTTCTAAC---CTTGCGGCAGGCCGACATGACGCCATCC 1054
consensus_9698#2 GGTTCGGACACACGCACTGATTTTCTAAC---CTTGCGGCAGGCCGACATGACGCCATCC 404
consensus_9698#1 GACTTATATCCACACACACACACACTGATGCGCATGTATGAATATGAAGTGCCGTGCTGC 446
* * * *** *** * ** * * ** * ** ** ** * *
consensus_9698#0 ACGGAAATAACGCCAAC---GCTTT---GCCGCGCAC---GTTTATCACCAGACGGCAGC 1105
consensus_9698#2 ACGGAAATAACGCCAAC---GCTTT---ACCGCGCAC---GTTTATCACCAGACGGCAGC 455
consensus_9698#1 TTGGTGAAGTCGTTAACCTGGTCTTCACACCGCGTACCCGGCGTGTCCTCCGCCGCCAGC 506
** * ** *** * ** ***** ** * * ** * * ** ****
consensus_9698#0 CATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCC 1165
consensus_9698#2 CATTTTGTTGCAACAATCGTGCCGTTGACCGCATCCGAGGGCCAACTGAACTGCGATGCC 515
consensus_9698#1 T-TCTAATACCAGGGAACATGANCCGCTTCAGCACCGAGCAGAGAGCAAGCCACGGCGGT 565
* * * ** * * ** * ***** * * * ** *
consensus_9698#0 GGTTTGCCACAC-----------GCCAGCCA--CGCTACGCACAGCTGCCGCCACTGCAG 1212
consensus_9698#2 GGTTTGCCACAC-----------GCCAGCCA--CGCTACGCACAGCTGCCGCCACTGCAG 562
consensus_9698#1 TGGACGGCACGTTGGATGGGGAAGTAAGGCGAGCGCGATGGGNCGTTTCCGTTACCGGTG 625
* * *** * ** * *** * * * * *** ** * *
consensus_9698#0 TAGCAACGCCCTTCCAGCAAC--AACCGGGGGTGCTACCGGGAGACACACCCGGGCGCCC 1270
consensus_9698#2 TAGCAACGCCCTTCCAGCAAC--AACCGGGGGTGCTACCGGGAGACACCCCCGGGCGCCC 620
consensus_9698#1 GTCCATGCTGAACACGCCAATTAGAACGGCGATCATTTTCTAATCCAAGACTGAGGGCCA 685
** * *** * *** * * * * ** * * * ***
consensus_9698#0 GCGCGGCAATGCTCGCAGAAA-CTC--ACGTACGCACCAACCGCTCTGCTTCACCGGCCC 1327
consensus_9698#2 GCGCGGCAATGCTCGCAGAAAGCTC--ACGTACGCACCAACCGCCCATACGTGCCGATTC 678
consensus_9698#1 CTAGTTCCATGCTGGTAAAGCCGTTCGACACACGCACTAATTCCCT-----CGNCCGATC 740
* ***** * * * * ** ****** ** * * *
consensus_9698#0 GG-- 1329
consensus_9698#2 TGCT 682
consensus_9698#1 TGC- 743
*
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||