These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1160 fasta sequence [CCGCCCACGCGTCCGCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT--AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG-ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT-GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG-T--A-ATGCGCGCGCGCG-CGCG--CTTG-TGTGTGAGTGTATG-TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC---AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG-GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG-TTTT----TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAAT-AAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCC] [+] EMBL BM643615 [CCGCCCACGCGTCCGCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATACTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGACGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGg ] [+] EMBL CNS08EP1 [ ataTCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGATAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGA CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC GTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATGCGCGCGCGC CCCT CTTGTTGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAATTTTGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACA ] [+] EMBL AGA281385 [ TTTTCTTTTCTTTCTACACTTCGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATACTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGG ] [-] EMBL CNS08EP2 [ TCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAAAAAACACTCAACACAATGCAAAAAATCTTCCGCAATGCCATCCTGGACAAACGCATAACCCGCAAGACGTTCTCCTTTTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCG TCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAAGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG TA A ATG GGGCGCGCG CGTG CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAG ] [+] EMBL CNS09OZ8 [ AACATACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGA CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC GTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATGCGCGCGCGCGCCCCT TTTGTTGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAAT AAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCC] [+] EMBL CNS09QSM [ gaaAAAAAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGACATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGA CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCAGAAC GTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATGCGCGCGCGCG CCCT TTTGCTGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAATAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTG ] [-] EMBL CNS09OZ9 [ AAACAAACAAAACAAAGCTTTCTACAGTGAAAAATAGAAGCGACGTAAGAGATAAAAAAAACTCAACACAATGCTCCGTTTCTTCCGGAATGCCATCCTGGACAAACGCATTACCCGCAAGACGTTCTCCTTTTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCCAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGGACTGCTGGAACCGTCGGAGGAGAATCG TCTGGCGATCGTCGATGTGGATGACAATGCGGGGCTGGTGCAGACGTTCGAGGTGAAAGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGTGGGTGGACAAATTCATCGGCCTGGTGGACGCGGACATGATCGAGAATCTTATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTGTT A ATG G GCGCGCG CGCG CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGGACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTAACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTTATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAAT AAAAAAAAag ] [-] EMBL CNS094LM [ AGCGACGTAAGAGATAAAACACA CAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAA GCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCAAACAAACGGTCCCTGGGGTGTGTGTTTG TTAA ATGGGCGCGCGCG CGCG CTTG TGTGTGAGTGTATG TATGGTGGATCCGGATGCACGTGCATGGAATTTTAGCGCAA AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTTTTTGTTTTTCTGTAAGAGTCCACACACCA GGGTGAAGCGA TTTATC TTTAA TTAC ATCGGA ] [+] EMBL BX608926 [ ACACAATGCTCCGTATCTTCCGCAATGCCATACTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATAAGCGCGCGCGCG CGCGCCCTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGA ] [-] EMBL CNS08V98 [ GAACCGTCGGAGGAGAATCG TCTGGCGATCGTCGATGTGGATGACAATGCGGGGCTGGTGCAGACGTTCGAGGTGAA GCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTTATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGAACACAAACGGTCCCTGGGGTGTGTGTTTG TA A ATG GGGCGCG CGCG CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGAACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAG CGTGAACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGG ] [-] EMBL CNS09QSN [ GCG CTTG TGTGTGAGTGTATGTTATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAG CGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGTTTTTTTTTTTTTATTTACGATC ] [-] EMBL AGA283000 [ c CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGACATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTGTTTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGA ] [+] EMBL BM581530 [ GTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGACATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTGTTTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTT ] [-] EMBL CNS08IGY [ ATTTTAGCGCAATAAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAGTGAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTTTTTGTTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAAATTACGATCGG ] consensusID : consensus_9735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence [CGCGAAAAAGATGGTCGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATT-GTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT--AAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGTGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTGTATGCGCGCGCGCCCCTATGCTGTGTGAGTGTATGTATGGTGGATCCGGATGCACGTGCATGGAATTTTAGCGCAAAAAAAAAAAAAAGACGGAGATGAGCCGTGCACGGGCACGGATTTTCGTTAGATATACCAAGTAAGCATAGGAACG] [+] EMBL CNS09ENV [CGCGAAAAAGATGGTCGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATT GTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGTGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTGTATGCGCGCGCGCCCCTATGCTGTGTGAGTGTATGTATGGTGGATCCGGATGCACGTGCATGGAATTTTAGCGCAAAAAAAAAAAAAAGACGGAGATGAGCCGTGCACGGGCACGGATTTTCGTTAGATATACCAAGTAAGCATAGGAACG] [+] EMBL CNS08IGX [ GATAAGCGTTTTATTTCGATTAGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAAAAGCGACGTAAGAAATAACACACA ] [+] EMBL CNS094LL [ TACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAAGTGT ] consensusID : consensus_9735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [ACCCGACGTCAGTCCTACTGCGACCGTTCCCGGACTCTTCTTCCTTCGGCAGTGTTAGCCAGTACCAGTCGATTTTATTCGACTCCCATCAGCAAGGAAGGTTTCGAGGACGATTTAGACATGGCTCCGAGATTCGAGCGAGAAGACTACAAGAAGGAACCGTACCACGGTGTGAAGCGCACCGGGACCGAGTTCAAGCGCGGAACTGGAACGACCGGTTCGCGCCCCGGTGGTGGTGGTTACGGTGGAGGTAGTGGTGTGTGGCGTGCGCCGGCGGCTATGGAGGTGGCGTAGTCGCTTCTTCACGATGGCCGAGCGCAACAGTGCGCGCGAGCTGGTCAACATC] [+] EMBL CNS08FJJ [ACCCGACGTCAGTCCTACTGCGACCGTTCCCGGACTCTTCTTCCTTCGGCAGTGTTAGCCAGTACCAGTCGATTTTATTCGACTCCCATCAGCAAGGAAGGTTTCGAGGACGATTTAGACATGGCTCCGAGATTCGAGCGAGAAGACTACAAGAAGGAACCGTACCACGGTGTGAAGCGCACCGGGACCGAGTTCAAGCGCGGAACTGGAACGACCGGTTCGCGCCCCGGTGGTGGTGGTTACGGTGGAGGTAGTGGTGTGTGGCGTGCGCCGGCGGCTATGGAGGTGGCGTAGTCGCTTCTTCACGATGGCCGAGCGCAACAGTGCGCGCGAGCTGGTCAACATC] consensusID : consensus_9735#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [GCCAAGAATCCCCCCGAGGTTTTAACAGTGCCGGACGTATCATTAGACATTGGTCCGACACACTTTTCTATTCCCAGTTGTTCGAATTAGCACAAGGAACAAGGGAACCCAACTTTNGCAACAGGGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAAGCCATACACAAGAAAAGCGGAAGCGGCACAAAATGTCCGACGATTACGACAGTACGACTTCGAGATGGAGAAGCACATCACCTCGGGGGCACAGGGCAGCAGCGGCAGCCAGAAGGAGGGC] [+] EMBL AL931106 [GCCAAGAATCCCCCCGAGGTTTTAACAGTGCCGGACGTATCATTAGACATTGGTCCGACACACTTTTCTATTCCCAGTTGTTCGAATTAGCACAAGGAACAAGGGAACCCAACTTTNGCAACAGGGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAAGCCATACACAAGAAAAGCGGAAGCGGCACAAAATGTCCGACGATTACGACAGTACGACTTCGAGATGGAGAAGCACATCACCTCGGGGGCACAGGGCAGCAGCGGCAGCCAGAAGGAGGGC] consensusID : consensus_9735#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [GTGTACGTGTGTGTCGGTGTGTTTAGGTGCGCGTACGCAACACGCGGACCGTTACGATCCTGGTCACGGCACCAGTTAAAAACTAAAAAAAAAACAGGGGTGATTTAACAAACGGGGGCACAACCACGGCCAAGCAGGGGGCACGGTGGAGCGCCGACGGGTATAGGGTCGGTGGTCGATGATAACGCTGA] [+] EMBL BX614774 [GTGTACGTGTGTGTCGGTGTGTTTAGGTGCGCGTACGCAACACGCGGACCGTTACGATCCTGGTCACGGCACCAGTTAAAAACTAAAAAAAAAACAGGGGTGATTTAACAAACGGGGGCACAACCACGGCCAAGCAGGGGGCACGGTGGAGCGCCGACGGGTATAGGGTCGGTGGTCGATGATAACGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9735#0 --------------CCGCCCACGCGTCCGCGTCTTTTCCTCGTTATCTGTGTTTAGTTTT 46 consensus_9735#1 CGCGAAAAAGATGGTCGCCAATA--TCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTT 58 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 CTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTG 106 consensus_9735#1 CTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTG 118 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGG 166 consensus_9735#1 TTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGG 178 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 ATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAA 226 consensus_9735#1 ATAAAAAAAA-CAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAA 237 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ----------------------------------------------------------AC 2 consensus_9735#0 GAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAA-AC 285 consensus_9735#1 GAGATAACACACA--CAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAA-AC 294 consensus_9735#3 --------------GCCAAGAATCCCCCCGAGGTTTTAACAGTGCCGGACGTATCATTAG 46 consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 CCGACGTCAGTCCTACTGCGACCGTTCCCGGACTCTTCTTCCT-TCGGCAGTGTTAGCCA 61 consensus_9735#0 GCATCA-CCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAG 344 consensus_9735#1 GCATCA-CCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAG 353 consensus_9735#3 ACATTGGTCCGACACACTTTTCTATTCCCAGTTGTT-CGAATTAGCACAAGGA-ACAAGG 104 consensus_9735#4 ----------------------------GTGTACGTGTGTGTCGGTGTGTTTAGGTGCGC 32 consensus_9735#2 GTACCAGTCGATTTTATTCGACTCCCATCAGCAAGGAAGGTTTCGAGGACGATTTAGACA 121 * * * * consensus_9735#0 GATCACTACGAGTTCGACCAGAAGGTGA---TAAACAGCGACAAC--CCGGTGATCGTCA 399 consensus_9735#1 GATCACTACGAGTTCGACCAGAAGGTGA---TAAACAGCGACAAC--CCGGTGATCGTCA 408 consensus_9735#3 GAACCCAACTTTNGCAACAGGGAGTTAAACCCAGGAAACGGAAGC--GCTACAAACTACA 162 consensus_9735#4 GTACGCAACACGCGGACCGTTACGATC----CTGGTCACGGCACCA-GTTAAAAACTAAA 87 consensus_9735#2 TGGCTCCGAGATTCGAGCGAGAAGACTACAAGAAGGAACCGTACCACGGTGTGAAGCGCA 181 * * * * * * * * * consensus_9735#0 ACTTCCACGCC---GAATGGTGTGACCCGTGCAA--AATACTTACCCCGAAGATGACGGA 454 consensus_9735#1 ACTTCCACGCC---GAATGGTGTGACCCGTGCAA--AATACTTACCCCGAAGATGACGGA 463 consensus_9735#3 AAAGCCATACACAAGAAAAGCGGAAGCGGCACAA--AATGTCCGAC--GATTACGACAGT 218 consensus_9735#4 AAAAAAACAGGGGTGATTTAACAAACGGGGGCAC--AACCACGGCC---AAGCAGGGGGC 142 consensus_9735#2 CCGGGACCGAGT-TCAAGCGCGGAACTGGAACGACCGGTTCGCGCCCCGGTGGTGGTGGT 240 * * * * * * * consensus_9735#0 -ACTGCTG-GA-ACCGTCGGAGGAGATCGATCTGGCGATC--GTCGATGTGGATGACAAT 509 consensus_9735#1 -ACTGCTG-GA-ACCGTCGGAGGAGATCGATCTGGCGATC--GTCGATGTGGATGACAAT 518 consensus_9735#3 -ACGACTTCGA-GATGGAGAAGCACATCACCTCGGGGGCA--CAGGGCAGCAGCGGCAGC 274 consensus_9735#4 -ACGGT---GG-AGCGCCGACGGGTATAGGGTCGGTGGTC--GATGATAACGCTGA---- 191 consensus_9735#2 TACGGTGGAGGTAGTGGTGTGTGGCGT-GCGCCGGCGGCTATGGAGGTGGCGTAGTCGCT 299 ** * * * * ** * * * consensus_9735#0 GCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC 569 consensus_9735#1 GCGGA-CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC 577 consensus_9735#3 -CAGAAGGAGGGC----------------------------------------------- 286 consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 TCTTCACGATGGCCGAGCGCAACAGTGCGCGCGAGCTGGTCAACATC------------- 346 consensus_9735#0 GGTGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATT 629 consensus_9735#1 G-TGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATT 636 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 GGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGG 689 consensus_9735#1 GGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGG 696 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TGTGTGTTTGTAATGCGCGCGCGCGCGCGCTTGTGTGTGAGTGTATGTATGGTGGAACCG 749 consensus_9735#1 TGTGTGTTTGTA-TGCGCGCGCGCCC-CTATGCTGTGTGAGTGTATGTATGGTGGATCCG 754 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 GATGCACGTGCATGGAATTTTAGCGCAAAAAACGAGGA--GCCGGAGATGAGCCGTGCAC 807 consensus_9735#1 GATGCACGTGCATGGAATTTTAGCGCAAAAAAAAAAAAAAGACGGAGATGAGCCGTGCAC 814 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 GGGCACGGATTT-CGTTAGATATACCAAGTAAGCATAGGAACGACTACCCCCTAGAACGG 866 consensus_9735#1 GGGCACGGATTTTCGTTAGATATACCAAGTAAGCATAGGAACG----------------- 857 consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 CAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTG 926 consensus_9735#1 ------------------------------------------------------------ consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 GTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCAT 986 consensus_9735#1 ------------------------------------------------------------ consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 TGTGTGATTGTACAGTGATCGATTTTATTGTTTTGTTTTTTTTTCTGTAAGAGTCCACAC 1046 consensus_9735#1 ------------------------------------------------------------ consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 ACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAA 1106 consensus_9735#1 ------------------------------------------------------------ consensus_9735#3 ------------------------------------------------------------ consensus_9735#4 ------------------------------------------------------------ consensus_9735#2 ------------------------------------------------------------ consensus_9735#0 AACAAAAATAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCC 1160 consensus_9735#1 ------------------------------------------------------ consensus_9735#3 ------------------------------------------------------ consensus_9735#4 ------------------------------------------------------ consensus_9735#2 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||