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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1095 fasta sequence
[CCGCCCACGCGTCCGGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGTAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCACCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTAACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCGTTGCGCAGTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGAACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGGCGAGGAAGCACCGCTGCCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAGACCATTTCGACCATCATTTCGTAGCGAATGAATGAAACGACGAAGCACATGGTATGCCTTTTGTGAAAATCGTGTTTTCTGAACTGCAAGAGCTAGTAGTCACGAAAACAGGAAAGGGTGACGGTAAGCAAGCTAAAAAGTATTACCTCGCAAACCCATCAACATGGAC]
[+] EMBL BM626134 [CCGCCCACGCGTCCGGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGTAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCACCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTAACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCGTTGCGCAGTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGAACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGGCGAGGAAGCACCGCTGCCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGT ]
[+] EMBL BM621122 [ ccgGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGGCGAGGAGGCACCGCTG CCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAGACCATTTCGACCATCATTTCGTAGCGAATGAATGAAACGACGAAGCACATGGTATGCCTTTTGTGAAAATCGTGTTTTCTGAACTGCAAGAGCTAGTAGTCACGAAAACAGGAAAGGGTGACGGTAAGCAAGCTAAAAAGTATTACCTCGCAAACCCATCAACATGGAC]
consensusID : consensus_9774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 975 fasta sequence
[TGTTGGCATTTGTACAAACACAGCAAACATTG-GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG-ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG-TTGCGCAGTGCGTGGAGCTAA-CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC-AG-AAG-AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC-TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT-GGAC-TTCCAGGT-GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT-CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT-CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG-CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAAAAAAAAAAAAAAAAGGCCCATGTGCCCGGGCT]
[+] EMBL CNS09E6J [TGTTGGCATTTGTACAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGCTTGCTGCCACCGGTATCTATTTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGC ]
[+] EMBL CNS0968F [ GTTGGCATTTGTACAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAC ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCATGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTG ]
[+] EMBL CNS096BX [ TTGTACAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCGTTTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTTTTCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTACCCATAAAAAAAAAAAAAAAAGGCC ]
[+] EMBL CNS099X8 [ ggaAAACACAGCAAACATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTACCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC ]
[+] EMBL CNS099O8 [ cAACATTGAGAGCGAG CGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAC ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTTCTGTGGTGGT CGCTGA ]
[+] EMBL BM596598 [ ccgATTG GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGTAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAGCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTAACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATATGGGACTTTCCAGGTGGGGCGAGGAGGCACCGCTGCCCGGGATCGAG ]
[+] EMBL CNS09ARU [ GAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACA CAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTACCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGC ]
[+] EMBL CNS09MEJ [ GAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAC ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAA ]
[+] EMBL CNS09A65 [ AAGCCGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAG ]
[+] EMBL CNS095QM [ AGCAGTGAAAAATTATTTTTACCACTCCAGGGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAG AGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAG ACGGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTTCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCGCGCATCAACACACGTA AAAAAAAAAAATTAAAAAGGCCCATGTGCCCGGGCT]
[-] EMBL CNS09MEK [ GGTTTTCGTTGCGGCCAGGGAATTCAGGCGCAAACACACAACGAAGGTTTGCCTTTCCAGCGACAGCAGGCAAAGCACAGCGCGAAAACGAGAAACAGGTGCCCGCCAGCCCCAGCGCAGAAAAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAAT ]
[-] EMBL CNS096BY [ AAACGAGAAAAAGGTGCCCGCCAGCCCCAGCGCAGAAAAAACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGTTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAAACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATTTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGTGCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGTCAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAG TACACGCTAATGCA ]
[+] EMBL BX613665 [ CGAGAAACAGGTGCCCGCCAGCCCCAGCGCAGCACAGACACGCCCGAAGAAAGCTTAACAGAAACAGCCGAAAAGATGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCTGAGTTTAGCCATAATTGTATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAA CGTTCGAGCTGCCCGACAACGCGAACGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGA ]
[+] EMBL BX613055 [ CGAGAAACAGGGGCCCGCCAGCCCCAGCGCAGCACAGAAACGCCCGAAGAAAGCTAAACAGAAACAGCCGAAAAGAAGAGCGACGGGAAATCTCACCAGCAGCAGCAAAGTCGGAGTg ]
[-] EMBL CNS0968G [ TATTGTTTGCGCTCTGCCACCAAATCCCCG TTGCGCAGTGCGTGGAGCTAAGCGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCATGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCgga ]
[-] EMBL CNS099O9 [ GGAGCTAA CGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCCGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAG TACACGCTAATGCAATAATAAAGCCCGCGCAg ]
[-] EMBL CNS09E6K [ TCCACGAGGAGATACAAGAAAGAAACCAAACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAG ]
[-] EMBL CNS09ARV [ AGGAGATAC AG AAG AACCAGACGGCAGCGTTGGAGTTTCAGGTCGTCAGCGGCGGACGGTACGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTCGTTGC TGCGGCCACCGGTATCTTTGTCGCCTGTTTCAGCAACGAGTTTTCCACCTTCTCGCACAAAATCGTCTATAT GGAC TTCCAGGT GGGCGAGGAGGCACCGCTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGCGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGCGAGAGGCACAAGGT CGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGT CGCTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGG CAGGTGCTGGTGCTGCGGAACTTCTTCTCGGAAAAGAAACCAAGCCAAATGA CTACACGCTAATGCAATAATAAAGCCCG ]
consensusID : consensus_9774#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[GCAAGAATCCCCCGAGNGTATTGGAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGTGTTTTCTGTTGCTGGCCAGTGAATTCAGTGCGTAAACACACAACTGAAGTGTTTGCCTTTCCAGCGACAGCAGGCAAATGCACAGCTGCTGAAAACTGAGAAACATGGTGCCCTGCCAGCCCCAGCTGCAGCACAGACACTGCCCTGAAGAAAGCTTAACAGAAACATGCCTGAAAAGATGAGCTGACTGGGAAATCTAACCAGCAGCATGCAAAGTCTGAGTTTAGCCATAATTTGTATTTGTATTTGCTGCTCTGCCANCCAAATCCCCGTTGCTGCAGTTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGGAACCAGACGGCAGCGTNTGGAGTTTCAGGTCTGTCAGCGGCTGGACGGTACTGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTACGTTGCTGCNGTGCACCTGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTNTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGTGCGAGGAGGCACCGTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACACCGGCTGCGAGCAGGCACAAGGTCGCA]
[+] EMBL AL931354 [GCAAGAATCCCCCGAGNGTATTGGAGCGAGCCGAAAGCCGTGAAAAATTATTTTTACCACTCCAGTGTTTTCTGTTGCTGGCCAGTGAATTCAGTGCGTAAACACACAACTGAAGTGTTTGCCTTTCCAGCGACAGCAGGCAAATGCACAGCTGCTGAAAACTGAGAAACATGGTGCCCTGCCAGCCCCAGCTGCAGCACAGACACTGCCCTGAAGAAAGCTTAACAGAAACATGCCTGAAAAGATGAGCTGACTGGGAAATCTAACCAGCAGCATGCAAAGTCTGAGTTTAGCCATAATTTGTATTTGTATTTGCTGCTCTGCCANCCAAATCCCCGTTGCTGCAGTTGCGTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAGAAGGAACCAGACGGCAGCGTNTGGAGTTTCAGGTCTGTCAGCGGCTGGACGGTACTGACGTGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGTTCGATTCGTACCAGTTACGTTGCTGCNGTGCACCTGGTATCTATGTCGCCTGTTTCAGCAACGAGTTTNTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGTGCGAGGAGGCACCGTGCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCGGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACACCGGCTGCGAGCAGGCACAAGGTCGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9774#0 ------------------CCGCCCACGCGTCCG-GCGAGCCGAAAGCCGTGAAAAATTAT 41
consensus_9774#1 TGTTGGCATTTGTACAAACACAGCAAACATTGGAGCGAGCCGAAAGCCGTGAAAAATTAT 60
consensus_9774#2 ---------GCAAGAATCCCCCGAGNGTATTGGAGCGAGCCGAAAGCCGTGAAAAATTAT 51
* * * **************************
consensus_9774#0 TTTTACCACTCCAGGGTTTTC-GTTGC-GGCCAGGGAATTCAG-GCGTAAACACACAAC- 97
consensus_9774#1 TTTTACCACTCCAGGGTTTTC-GTTGC-GGCCAGGGAATTCAG-GCGCAAACACACAAC- 116
consensus_9774#2 TTTTACCACTCCAGTGTTTTCTGTTGCTGGCCAGTGAATTCAGTGCGTAAACACACAACT 111
************** ****** ***** ****** ******** *** ***********
consensus_9774#0 GAAG-GTTTGCCTTTCCAGCGACAGCAGGCAAA-GCACAGCG--CGAAAAC-GAGAAACA 152
consensus_9774#1 GAAG-GTTTGCCTTTCCAGCGACAGCAGGCAAA-GCACAGCG--CGAAAAC-GAGAAACA 171
consensus_9774#2 GAAGTGTTTGCCTTTCCAGCGACAGCAGGCAAATGCACAGCTGCTGAAAACTGAGAAACA 171
**** **************************** ******* ****** ********
consensus_9774#0 -GGTGCCC-GCCAGCCCCAGC-GCACCACAGACACG--CCCGAAGAAAGCTTAACAGAAA 207
consensus_9774#1 -GGTGCCC-GCCAGCCCCAGC-GCAG-ACAGACACG--CCCGAAGAAAGCTTAACAGAAA 225
consensus_9774#2 TGGTGCCCTGCCAGCCCCAGCTGCAGCACAGACACTGCCCTGAAGAAAGCTTAACAGAAA 231
******* ************ *** ******** ** *******************
consensus_9774#0 CAG--CCGAAAAGATGAGC-GAC-GGGAAATCTAACCAGCAGCA-GCAAAGTCTGAGTTT 262
consensus_9774#1 CAG--CCGAAAAGATGAGC-GAC-GGGAAATCTCACCAGCAGCA-GCAAAGTCTGAGTTT 280
consensus_9774#2 CATGCCTGAAAAGATGAGCTGACTGGGAAATCTAACCAGCAGCATGCAAAGTCTGAGTTT 291
** * ************ *** ********* ********** ***************
consensus_9774#0 AGCCATAATT-GTATT---GTTTGC-GCTCTGCCACC-AAATCCCCGTTGC-GCAGT-GC 314
consensus_9774#1 AGCCATAATT-GTATT---GTTTGC-GCTCTGCCACC-AAATCCCCGTTGC-GCAGT-GC 332
consensus_9774#2 AGCCATAATTTGTATTTGTATTTGCTGCTCTGCCANCCAAATCCCCGTTGCTGCAGTTGC 351
********** ***** ***** ********* * ************* ***** **
consensus_9774#0 GTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAG 374
consensus_9774#1 GTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAG 392
consensus_9774#2 GTGGAGCTAACGTTCGAGCTGCCCGACAACGCGAAAGAGTGTTTCCACGAGGAGATACAG 411
************************************************************
consensus_9774#0 AAG-AACCAGACGGCAGCGTT-GGAGTTTCAGGTC-GTCAGCGGC-GGACGGTAC-GACG 429
consensus_9774#1 AAG-AACCAGACGGCAGCGTT-GGAGTTTCAGGTC-GTCAGCGGC-GGACGGTAC-GACG 447
consensus_9774#2 AAGGAACCAGACGGCAGCGTNTGGAGTTTCAGGTCTGTCAGCGGCTGGACGGTACTGACG 471
*** **************** ************* ********* ********* ****
consensus_9774#0 TGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGT 489
consensus_9774#1 TGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGT 507
consensus_9774#2 TGGACGTGACGCTAGAGAGTCCCACCGGGGAGGTGATCTACAGGCAAATCAAAACCCAGT 531
************************************************************
consensus_9774#0 TCGATTCGTACCAGTT-CGTTGCTGCGGC-CACC-GGTATCTATGTCGCCTGTTTCAGCA 546
consensus_9774#1 TCGATTCGTACCAGTT-CGTTGCTGCGGC-CACC-GGTATCTATGTCGCCTGTTTCAGCA 564
consensus_9774#2 TCGATTCGTACCAGTTACGTTGCTGCNGTGCACCTGGTATCTATGTCGCCTGTTTCAGCA 591
**************** ********* * **** *************************
consensus_9774#0 ACGAGTTTT-CCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGG-GCGAGGA 604
consensus_9774#1 ACGAGTTTT-CCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGG-GCGAGGA 622
consensus_9774#2 ACGAGTTTNTCCACCTTCTCGCACAAAATCGTCTATATGGACTTCCAGGTGGTGCGAGGA 651
******** ****************************************** *******
consensus_9774#0 AGCACCGCTGCCCCGGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCG 664
consensus_9774#1 GGCACCGCTGCCC-GGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCG 681
consensus_9774#2 GGCACCG-TGCCC-GGGATCGAGGAGCACGCGACCGTCCTGACGCAGCTGGAAACGTCCG 709
****** ***** **********************************************
consensus_9774#0 CGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGC 724
consensus_9774#1 CGCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCACCACCGGCTGC 741
consensus_9774#2 -GCAGGAGATACACAAGGGGCTGAACGCGATCCTTGACTACCAAACGCAC-ACCGGCTGC 767
************************************************* *********
consensus_9774#0 GAG-AGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCG 783
consensus_9774#1 GAG-AGGCACAAGGTCGCAAGCGTGCGGAAGATCTGAACGAGCGTGTGCTGTGGTGGTCG 800
consensus_9774#2 GAGCAGGCACAAGGTCGCA----------------------------------------- 786
*** ***************
consensus_9774#0 CTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAAC 843
consensus_9774#1 CTGACCGAGACGGCCGCCATCCTGCTGATCGCGATCGGGCAGGTGCTGGTGCTGCGGAAC 860
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 TTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCG 903
consensus_9774#1 TTCTTCTCGGAAAAGAAACCAAGCCAAATGAGCTACACGCTAATGCAATAATAAAGCCCG 920
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 CGCATCAACACACGTACCCATAGACCATTTCGACCATCATTTCGTAGCGAATGAATGAAA 963
consensus_9774#1 CGCATCAACACACGTACCCATAAAAAAA--AAAAAAAAAGGCCCATGTGCCCGGGCT--- 975
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 CGACGAAGCACATGGTATGCCTTTTGTGAAAATCGTGTTTTCTGAACTGCAAGAGCTAGT 1023
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 AGTCACGAAAACAGGAAAGGGTGACGGTAAGCAAGCTAAAAAGTATTACCTCGCAAACCC 1083
consensus_9774#1 ------------------------------------------------------------
consensus_9774#2 ------------------------------------------------------------
consensus_9774#0 ATCAACATGGAC 1095
consensus_9774#1 ------------
consensus_9774#2 ------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||