cluster # 9999

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Anopheles gambiae
cluster # 9999 cluster # 9999 Sequences # 25 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9999#0 length = 495 sequences # 15
consensus_9999#1 length = 463 sequences # 6

consensus_9999#2 length = 446 sequences # 3
consensus_9999#3 length = 410 sequences # 1

consensusID : consensus_9999#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 495
fasta sequence

                              [CCGCCCAAGATTTTCTCGACATCCCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGTAAAATAACGT]

[+] EMBL BM630990             [CCGCCCACG CGTCCGCGACATCCCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGCTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGT          ]
[+] EMBL BM587757             [CCGCTCAAGATTTTCTCGACATCCCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATA                                             ]
[+] EMBL BM609544             [     ccgGATTTTCTCGACATCCCAAAATCTTCTAGCATCCGTTCTCGAAGCGATAAGGGCGATTCCGTAAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCCGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAG                                            ]
[+] EMBL BM625168             [                       CCGAAATCTTCTAGCATCCGTTCTCGAAGCGATAAGGGCGATTCCGTAAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCCGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGATGT          ]
[+] EMBL BM635554             [                    ccgCCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGACCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAG              ]
[+] EMBL BM580375             [                     ccgCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGATGTAAAATAACGT]
[+] EMBL BM609886             [                     ccgCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACT                           ]
[+] EMBL BM578629             [                                 ccgGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAA                                     ]
[+] EMBL BM629188             [                                      ccgTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTG                    ]
[+] EMBL BM600548             [                                          ccgCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGT          ]
[+] EMBL BM652607             [                                                       ccgGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGGCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGT          ]
[+] EMBL BM618554             [                                                       ccgGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGT          ]
[+] EMBL BM607993             [                                                       ccgGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGT          ]
[+] EMBL BM579818             [                                                          ccgCGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGT          ]
[+] EMBL BM632611             [                                                                                                                                                                                                                                                                                                                                                                                    ccgGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACAGATGTAAAATAACtt]




>consensus_9999#0
CCGCCCAAGATTTTCTCGACATCCCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGG
ACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCG
GATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGC
AAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCA
GAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGA
GATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCC
CGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCC
CGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAACA
GATGTAAAATAACGT

consensusID : consensus_9999#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 463
fasta sequence

                              [CCGCCCACGCGTCCG-------GTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGATGTACGAT]

[+] EMBL BM579796             [CCGCCCACGCGTCCG       GTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGA        ]
[+] EMBL BM628000             [CCGCCCACGCGTCCG            CGAAGCGATAAGGGCGATTCCGTAAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCCGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTG               ]
[+] EMBL BM609822             [CCGCCCACGCGTCCGAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA                                   ]
[+] EMBL BM632964             [                            ccgGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGATGTACG  ]
[+] EMBL BM639471             [                            ccgGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGATGT     ]
[+] EMBL BM636996             [                                      ccgCGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAACAGATGTAaaat]




>consensus_9999#1
CCGCCCACGCGTCCGGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAA
GATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAA
TTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGT
GACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGC
TACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGG
AGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAAT
TGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAA
ATAGGAAATAACATTATCACTGCTTCTGAAACAGATGTACGAT

consensusID : consensus_9999#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 446
fasta sequence

                              [CCGCCCACGCGTCCGCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA]

[+] EMBL BM578537             [CCGCCCACGCGTCCGCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA]
[+] EMBL BM576617             [                                               ccGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAA ]
[+] EMBL BM601403             [                                                                                                                                                                                                       ACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGGGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAATATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAG    ]




>consensus_9999#2
CCGCCCACGCGTCCGCAAAATCTTCTAGCATCTGTTCTCGAAGCGATAAGGACGATTCCG
TGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGG
ACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCC
AATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGG
TGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAA
ACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTCCCCGCCTTCAA
GTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCT
AAAAGCAGGCATCTTTAAATAGGAAA

consensusID : consensus_9999#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [GACCCACGCGTCCGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGTTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCATGGCGAACATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA]

[+] EMBL BM622203             [GACCCACGCGTCCGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGTTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCATGGCGAACATATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA]




>consensus_9999#3
GACCCACGCGTCCGGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGAT
TCTATCCGCTGCCCGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGT
ACTGCTGGCTAAGGCAAGCGATCCAATCCAGCAGTTGTTCGTGACCAAACTCCGTGAATA
CGCACAGAAGAGCCAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCG
TGAATTGAAGCAAGAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCATGGCGAACA
TATGACTGCCTTCCCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAG
CGCTTGAATGGTGCCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9999#1      -----------------------------CCGCCCACGCGTCCGGTTCTCGAAGCGATAA 31
consensus_9999#3      ----------------------------------------------GACCCACGCG-TCC 13
consensus_9999#0      CCGCCCAAGATTTTCTCGACATCC-CAAAATCTTCTAGCATCTG-TTCTCGAAGCGATAA 58
consensus_9999#2      ----------CCGCCCACGCGTCCGCAAAATCTTCTAGCATCTG-TTCTCGAAGCGATAA 49
                                                                       * * *** *  

consensus_9999#1      GGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCC 91
consensus_9999#3      GGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCC 73
consensus_9999#0      GGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCC 118
consensus_9999#2      GGACGATTCCGTGAATTAAATAAACCGAAGATGCTGACCAACCAGATTCTATCCGCTGCC 109
                      ************************************************************

consensus_9999#1      CGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAG 151
consensus_9999#3      CGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAG 133
consensus_9999#0      CGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAG 178
consensus_9999#2      CGGATTGTTGGACTGCAGACTCGCCGTAATTACGGTGTCTCTGCTGTACTGCTGGCTAAG 169
                      ************************************************************

consensus_9999#1      GCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGC 211
consensus_9999#3      GCAAGCGATCCAATCCAGCAGTTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGC 193
consensus_9999#0      GCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGC 238
consensus_9999#2      GCAAGCGATCCAATCCAGCAGCTGTTCGTGACCAAACTCCGTGAATACGCACAGAAGAGC 229
                      ********************* **************************************

consensus_9999#1      CAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAA 271
consensus_9999#3      CAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAA 253
consensus_9999#0      CAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAA 298
consensus_9999#2      CAGAGCGCTGGTGGCAAACTAGTTGATGCTACACCGGAAATCCAGCGTGAATTGAAGCAA 289
                      ************************************************************

consensus_9999#1      GAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTC 331
consensus_9999#3      GAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCATGGCGAACATATGACTGCCTTC 313
consensus_9999#0      GAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTC 358
consensus_9999#2      GAGATGGAGAAACTGGCCAAGCAGTACGGAGGTGGTCAGGGCGAAGATATGACTGCCTTC 349
                      ************************************** ****** **************

consensus_9999#1      CCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTG 391
consensus_9999#3      CCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTG 373
consensus_9999#0      CCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTG 418
consensus_9999#2      CCCGCCTTCAAGTTCGAGGAGCCCAAAATTGATCCGATCAATTCCAGCGCTTGAATGGTG 409
                      ************************************************************

consensus_9999#1      CCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTTCTGAAA 451
consensus_9999#3      CCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA----------------------- 410
consensus_9999#0      CCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAATAACATTATCACTGCTCTTGAAA 478
consensus_9999#2      CCCGGTCATCTAAAAGCAGGCATCTTTAAATAGGAAA----------------------- 446
                      *************************************                       

consensus_9999#1      CAGATGTACGAT----- 463
consensus_9999#3      -----------------
consensus_9999#0      CAGATGTAAAATAACGT 495
consensus_9999#2      -----------------