These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 753 fasta sequence [GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATGCTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCGAGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGATATTGGTACTGTTCCTATTCCGAAATCTAGTTCAA] [+] EMBL BI513082 [GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATGCTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAA GAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAA ] [+] EMBL BI511786 [ CGTCGAACAAGCTGTACGAGATGCTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGT ] [+] EMBL BI515252 [ CGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTA ] [+] EMBL BI505271 [ ATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCTAGATTAGCAAAAAATATGAAA ] [+] EMBL BI512974 [ ATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAGTAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTATCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGNGATTTTTGCAAACAAC ] [+] EMBL BI503235 [ GTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAACATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGAATGTGGATTATTGTGACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACGAAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCTCAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTTCGAGATTTTTGCAAACAACGTGATATAGTTATTACGGCTTACAGTCCACTTGGTTCCCCTAAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTCGAGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGATATTGGTACTGTTCCTATTCCGAAATCTAGTTCAA] consensusID : consensus_100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 216 fasta sequence [TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGNAACCANNTTGGACTGTACACCCGGCATAGGCTATGTCACATTGGTGTTGCAAAAATCTCNACCTTTTGCTTGATTTAAATTTGGATGGCATTCTACTT] [+] EMBL BG101553 [TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGTCTTATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGNAACCANNTTGGACTGTACACCCGGCATAGGCTATGTCACATTGGTGTTGCAAAAATCTCNACCTTTTGCTTGATTTAAATTTGGATGGCATTCTACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_100#0 GACTTGGTACTTGGCAATCTGCAGATAATCCAGGTGTCGTCGAACAAGCTGTACGAGATG 60 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CTATCGATGCCGGATATCGACATTTTGATTGCGCTTACATTTATAGAAATGAAAAAGAAG 120 consensus_100#1 ------------------------------------------------------------ consensus_100#0 TAGGCAAAGCTATACATGATAAAATTGCAGAAGGTGTAGTAAAGAGAGAAGATCTATTTA 180 consensus_100#1 ------------------------------------------------------------ consensus_100#0 TCACAACAAAGTTATGGAATACAATGCACAAAAAAGAACAAGTAGTACCAGCATGCAAAA 240 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CATCGCTTAAAAATTTTGGATTCGATTATGTTGATCTTTATCTTATCCATTGGCCCATGT 300 consensus_100#1 --TCGCTTAAAAATTTTGGATTCGANTATGTTGATCTNTATCTTATCCATTGGCCCATGT 58 *********************** *********** ********************** consensus_100#0 CTTATGATGAAGTAAATGAAAAAGAAAGTTTTTGGCCCAAAACTAAAGATCTGTATGAGA 360 consensus_100#1 CTTATGATGAAGTAAATGANACTGNAGGATCATGGCNCANANCCCAAGATCTNTTAGGGN 118 ******************* * * * * * **** ** * * ******* * * * consensus_100#0 ATGTGGATTATTGTG-ACACATGGCAAGGAATGGAAGAATGTGTAAAATTGGGATTAACG 419 consensus_100#1 AACCANNTTGGACTGTACACCCGGCAT--------AGGCTATGTCACATTGGTGTTGCAA 170 * ** ** **** **** ** * *** * ***** ** consensus_100#0 AAAAGCATAGGTCTTAGTAATTTTAATTCCCAACAGATCGATCGTATTTTATCAATCGCT 479 consensus_100#1 AAATCTCNACCTTTTGCTTGATTTAAATTTGGATGG---CATTCTACTT----------- 216 *** * * ** * ***** * * * ** ** ** consensus_100#0 CAAATCAAACCTGTCATGAATCAAGTAGAATGCCATCCAAATTTAAATCAAAAAAAGCTT 539 consensus_100#1 ------------------------------------------------------------ consensus_100#0 CGAGATTTTTGCAAACAACGTGATATAGTTATTACGNNTTACAGTCCACTTGGTTCCCCT 599 consensus_100#1 ------------------------------------------------------------ consensus_100#0 AAACGTACTTGGGCGAAACCTACTGATCCACAAGTAGCAATCGAAGCACCAGAAATTCTC 659 consensus_100#1 ------------------------------------------------------------ consensus_100#0 GAGATTAGCAAAAAATATGAAAAAACGCCAGCTCAAGTTGTTTTACGATATTTGATCGAT 719 consensus_100#1 ------------------------------------------------------------ consensus_100#0 ATTGGTACTGTTCCTATTCCGAAATCTAGTTCAA 753 consensus_100#1 ---------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |