These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 648 fasta sequence [CGTCCAGGAGGTAAAACTGGTGGTGGAGGTGTTGCATCTTGGTCAGAAAGTAACCGAGATAGAAGAGAACGTTTACGACAACTTGCATTGGAAACTATTGATCTTAATAAAGATCCATATTTTATGAAAAATCATTTAGGATCATATGAATGTAAATTATGTTTAACTCTTCACAATAATGAAGGTAGTTATTTAGCTCATACACAGGGTAAAAAGCATCAAGCAAATTTAGCTAGAAGAGCTGCTAAAGAAGCAAAGGAAGCACCTCAAACACTTGCACCTGAAAAACCTCGTGTAGAACCAAAAAAATTTGTAAAAATTGGAAGACCTGGTTACAGAGTAACTAAACAACGTGATCCAGAATCAGGACAACAAAGTTTATTGTTTCAAGTCGATTATCCAGAAGTTGCAGATAATGTTATTCCAAGACATAGATTTATGTCAGCATATGAACAAAGAGTTGAACCACCAGATCGTAAATGGCAATACTTATTATTTGCTGCTGAGCCTTATGAAACTATAGCTTTCAAAGTTCCTAGTAGAGAAGTTGAAAAGGCAGAAGGCAAGTTTTGGACACATTGGAACAAAGATACAAAACAATTTTTTTTACAATTTGCATTTAAAAATGAAAAACCTTCAGTTGGCAAA] [+] EMBL BI515479 [CGTCCAGGAGGTAAAACTGGTGGTGGAGGTGTTGCATCTTGGTCAGAAAGTAACCGAGATAGAAGAGAACGTTTACGACAACTTGCATTGGAAACTATTGATCTTAATAAAGATCCATATTTTATGAAAAATCATTTAGGATCATATGAATGTAAATTATGTTTAACTCTTCACAATAATGAAGGTAGTTATTTAGCTCATACACAGGGTAAAAAGCATCAAGCAAATTTAGCTAGAAGAGCTGCTAAAGAAGCAAAGGAAGCACCTCAAACACTTGCACCTGAAAAACCTCGTGTAGAACCAAAAAAATTTGTAAAAATTGGAAGACCTGGTTACAGAGTAACTAAACAACGTGATCCAGAATCAGGACAACAAAGTTTATTGTTTCAAGTCGATTATCC ] [+] EMBL BI514357 [ TAGCTAGAAGAGCTGCTAAAGAAGCAAAGGAAGCACCTCAAACACTTGCACCTGAAAAACCTCGTGTAGAACCAAAAAAATTTGTAAAAATTGGAAGACCTGGTTACAGAGTAACTAAACAACGTGATCCAGAATCAGGACAACAAAGTTTATTGTTTCAAGTCGATTATCCAGAAGTTGCAGATAATGTTATTCCAAGACATAGATTTATGTCAGCATATGAACAAAGAGTTGAACCACCAGATCGTAAATGGCAATACTTATTATTTGCTGCTGAGCCTTATGAAACTATAGCTTTCAAAGTTCCTAGTAGAGAAGTTGAAAAGGCAGAAGGCAAGTTTTGGACACATTGGAACAAAGATACAAAACAATTTTTTTTACAATTTGCATTTAAAAATGAAAAACCTTCAGTTGGCAAA] consensusID : consensus_1009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [ACAATTTGCATTTAAAAATGAAAAACCTTCAGTTGGCAAAGTACCACCTCCTCCTGTTCCTTTAATAAGGCCTGGATTAGGACCACCTATGGTACCAGTTCCACCACCACCAAGACCACCTATGTTTAATCCAGTACCACCACCACCAGCTCTTTTAGCAACAGGCATGCAAATACCTCCACCACCTCCTCATATAGCATAATCTTTTGATTAATAATAAAATAAAATAAAAAAATATTAATGAAAAAAAAAA] [+] EMBL BI513136 [ACAATTTGCATTTAAAAATGAAAAACCTTCAGTTGGCAAAGTACCACCTCCTCCTGTTCCTTTAATAAGGCCTGGATTAGGACCACCTATGGTACCAGTTCCACCACCACCAAGACCACCTATGTTTAATCCAGTACCACCACCACCAGCTCTTTTAGCAACAGGCATGCAAATACCTCCACCACCTCCTCATATAGCATAATCTTTTGATTAATAATAAAATAAAATAAAAAAATATTAATGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1009#0 CGTCCAGGAGGTAAAACTGGTGGTGGAGGTGTTGCATCTTGGTCAGAAAGTAACCGAGAT 60 consensus_1009#1 ------------------------------------------------------------ consensus_1009#0 AGAAGAGAACGTTTACGACAACTTGCATTGGAAACTATTGATCTTAATAAAGATCCATAT 120 consensus_1009#1 ------------------------------------------------------------ consensus_1009#0 TTTATGAAAAATCATTTAGGATCATATGAATGTAAATTATGTTTAACTCTTCACAATAAT 180 consensus_1009#1 ------------------------------------------------------------ consensus_1009#0 GAAGGTAGTTATTTAGCTCATACACAGGGTAAAAAGCATCAAGCAAATTTAGCTAGAAGA 240 consensus_1009#1 -------------------------------------ACAATTTGCATTTAAAAATGAAA 23 * * ***** * * * consensus_1009#0 GCTGCTAAAGAAGCAAAGGAAGCACCTCAAACACTTGCACCTGAAAAACCTCGTGTAGAA 300 consensus_1009#1 AACCTTCAGTTGGCAAAGTAC-CACCTCCTCCTGTTCCTTTAATAAGGCCTGGATTAGGA 82 * * ****** * ****** * ** * ** *** * *** * consensus_1009#0 CCAAAAAAATTTGTAAAAATTGGAAGACCTGGTTACAGAGTAACTAAACAACGTGATCCA 360 consensus_1009#1 CCACCTA---TGGTACCAGTTCCACCACC--ACCA-AGACCACCTATGTT---TAATCCA 133 *** * * *** * ** * *** * *** * *** * ***** consensus_1009#0 GAATCAGGACAACAAAGTTTATTGTTTCAAGTCGATTATCCAGAAGTTGCAGATAATGTT 420 consensus_1009#1 GTACCACCACCACCAGCTCT----TTTAGCAACAGGCATGCAAATACCTCC-ACCACCTC 188 * * ** ** ** * * * *** * ** ** * * * * * consensus_1009#0 ATTCCAAGACATAGATTTATGTCAGCATATGAACAAAGAGTTGAACCACCAGATCGTAAA 480 consensus_1009#1 CTCATATAGCATAATCTTTTG-------ATTAATAATAAAATAAAATAAAAAAATATTAA 241 * * **** ** ** ** ** ** * * ** * * * * ** consensus_1009#0 TGGCAATACTTATTATTTGCTGCTGAGCCTTATGAAACTATAGCTTTCAAAGTTCCTAGT 540 consensus_1009#1 TGAAAAAAAAAA------------------------------------------------ 253 ** ** * * consensus_1009#0 AGAGAAGTTGAAAAGGCAGAAGGCAAGTTTTGGACACATTGGAACAAAGATACAAAACAA 600 consensus_1009#1 ------------------------------------------------------------ consensus_1009#0 TTTTTTTTACAATTTGCATTTAAAAATGAAAAACCTTCAGTTGGCAAA 648 consensus_1009#1 ------------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |