These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 595 fasta sequence [CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAAGAAAAAAAA] [+] EMBL BI509934 [CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGTGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCG ] [+] EMBL BI504214 [ ACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAA ] [+] EMBL BI508220 [ ACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACA ] [+] EMBL BI504412 [ TGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAA ] [+] EMBL BI504234 [ GAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAATTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAATTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAAGAAAAAAAA] [+] EMBL BI508322 [ CCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCACTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAAGTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAAAATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCTGACGATGCAAAAAGTTTAAAGTTGCACAA ] consensusID : consensus_105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGTGCATATTTTTCAGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAGTTGC] [+] EMBL BI503305 [AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCATGCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACAAGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGTGCATATTTTTCAGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_105#0 CGGACGGTGTAAAACGGGCTGCCAGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCAT 60 consensus_105#1 -----------------------AGCGGTGAGGCTGCAGAGCAGGCCGCTCGTCCAGCAT 37 ************************************* consensus_105#0 GCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACA 120 consensus_105#1 GCAACCACCACCAAGAAAAGGAAATTACACAAAATTTCTTAAAAATGTACACGCAGAACA 97 ************************************************************ consensus_105#0 AGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACG--- 177 consensus_105#1 AGCGGCAAAGTTACAAGCGAAAAATCAACATGAATGTGACCTTCTAGAAGATATACGTGC 157 ********************************************************* consensus_105#0 -----------CAACTTTACAATAAAGAAGTCTGCAATTGAAAAATCGTATTCAGAGGCA 226 consensus_105#1 ATATTTTTCAGCAACTTTACAATAAAGAAGTCTGCAATTGAAAAGTTGC----------- 206 ********************************* * * consensus_105#0 CTTCTTAAAATATCTTCTGCATATTTGAATAAAAAAATACCAAATATTCCGGATCTCAAA 286 consensus_105#1 ------------------------------------------------------------ consensus_105#0 GTTGATGGAGCAGAAGAGAAATGGAATATGTGGAATGTTTGGCGAACTGTCCTAGAAGAA 346 consensus_105#1 ------------------------------------------------------------ consensus_105#0 AATGAGAAATTGGCTAGAGCGCGATTAGCAGCAGTAGAAGTTTTCCAACAACAAATTGCT 406 consensus_105#1 ------------------------------------------------------------ consensus_105#0 GACGATGCAAAAAGTTTAAAGTTGCACAAACTACAAATTTCTAAGAAGGCAATCGACCAA 466 consensus_105#1 ------------------------------------------------------------ consensus_105#0 TTAATGATAGTACAAAAAGAATTACAAATCTGTGTACAAGATGTAGACAAAACAAAGAAA 526 consensus_105#1 ------------------------------------------------------------ consensus_105#0 TTGTATTTCGATGAAGAACATAGCGCCCATGATGTACGCGACAAAGCGAAAGATATTGAA 586 consensus_105#1 ------------------------------------------------------------ consensus_105#0 GAAAAAAAA 595 consensus_105#1 --------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |