These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG] [+] EMBL BI512573 [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG] [+] EMBL BI512464 [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTAT ] consensusID : consensus_1108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACCGGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATTCACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT] [+] EMBL BI502723 [ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACCGGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATTCACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1108#0 GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT 60 consensus_1108#1 ------------------------ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT 36 ************************************ consensus_1108#0 GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG 120 consensus_1108#1 GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG 96 ************************************************************ consensus_1108#0 GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT 180 consensus_1108#1 GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT 156 ************************************************************ consensus_1108#0 TAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCG 240 consensus_1108#1 TAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAA--GGTAAGG 214 ***************************** ** * * * **** **** * consensus_1108#0 AAAAAGTAACCAGACCTCTGGTACTCGATGTGG--AAAGTATTACATATGAATATAAATC 298 consensus_1108#1 AGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGC 274 * *** * * ** * * **** *** ** * * * * * consensus_1108#0 TCGTCGATAATACCT--TACCTACAGTTGGTCACAAA-AGTATTCTTCTTTTACCAACGG 355 consensus_1108#1 AAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAA 334 ** ** * *** * ** * * ** * * * ** ** consensus_1108#0 AAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAAT 415 consensus_1108#1 GGCATGGT--GAACGTTGGTG-TCCAACCGGA--GTCGACATCATACGC-GCTGCGATTT 388 ** * *** ** * * ** * * **** * ***** * * consensus_1108#0 TAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAG 475 consensus_1108#1 CGGCCATACCAAAAATAGTCTG--CGAAACGATTCACGCCC-----TGGAGCTGCACGAT 441 * * * ** *** * ** *** ** ** * * * * * * consensus_1108#0 GATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGA 535 consensus_1108#1 GAGACACCCTCGTGGAAGATCATGGACAAT------------------------------ 471 ** * * * *** * ** ** * consensus_1108#0 TAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG 574 consensus_1108#1 --------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |