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Apis mellifera
cluster # 1108 cluster # 1108       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1108#0 length = 574 sequences # 2  
consensus_1108#1 length = 471 sequences # 1  

consensusID : consensus_1108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence
                              [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG]

[+] EMBL BI512573             [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG]
[+] EMBL BI512464             [GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCGAAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTCGTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAATAATTTTAATCTGCTTAT                 ]


>consensus_1108#0 GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT TAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCG AAAAAGTAACCAGACCTCTGGTACTCGATGTGGAAAGTATTACATATGAATATAAATCTC GTCGATAATACCTTACCTACAGTTGGTCACAAAAGTATTCTTCTTTTACCAACGGAAAAT TATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAATTAGAT AAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAGGATTG GGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGATAAAT AATTTTAATCTGCTTATATATTGGAATATTTTCG



consensusID : consensus_1108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence
                              [ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACCGGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATTCACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT]

[+] EMBL BI502723             [ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACCGGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATTCACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT]


>consensus_1108#1 ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGTGCTTGCTGGGACGGTCCCTTACCT GCAGGGATATGACGTAATGGCAAGAGAGGAGTTACGGACCAAGAGACCTTTTAAGATATG GGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGTTAGCAATTTCGAGGAACTGATACA CCAGGATATTGGGATTACTGGTCGAAAGGTAAGGAGAAACTGGGCGTGCCACAGAGCGAG AATGTATCCGTAGTGTTGGAGTCGGACGGTACGCAAGTGGAGGACGGGGAATACTTCAAG ACCCTAGCGAACAACACGATCCTATTGTTGCTAAGGCATGGTGAACGTTGGTGTCCAACC GGAGTCGACATCATACGCGCTGCGATTTCGGCCATACCAAAAATAGTCTGCGAAACGATT CACGCCCTGGAGCTGCACGATGAGACACCCTCGTGGAAGATCATGGACAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1108#0      GCATCCCGTCGCCACGATAATGCGACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT 60
consensus_1108#1      ------------------------ACGTGCAGCTTCTTTACTCGTTCCTTCTGAATAAGT 36
                                              ************************************

consensus_1108#0      GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG 120
consensus_1108#1      GCTTGCTGGGACGGTCCCTTACCTGCAGGGATATGACGTAATGGCAAGAGAGGAGTTACG 96
                      ************************************************************

consensus_1108#0      GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT 180
consensus_1108#1      GACCAAGAGACCTTTTAAGATATGGGACAGTTGGCGTAACGTAAGAAAGGGACTGTGTGT 156
                      ************************************************************

consensus_1108#0      TAGCAATTTCGAGGAACTGATACACCAGGGTAAGAAGCGTGCCCTCTGAAACCGGTAGCG 240
consensus_1108#1      TAGCAATTTCGAGGAACTGATACACCAGGATATTGGGATTACTGGTCGAAA--GGTAAGG 214
                      ***************************** **    *  * *     ****  ****  *

consensus_1108#0      AAAAAGTAACCAGACCTCTGGTACTCGATGTGG--AAAGTATTACATATGAATATAAATC 298
consensus_1108#1      AGAAACTGGGCGTGCCACAGAGCGAGAATGTATCCGTAGTGTTGGAGTCGGACGGTACGC 274
                      * *** *   *   ** * *       ****      *** **  *   * *    *  *

consensus_1108#0      TCGTCGATAATACCT--TACCTACAGTTGGTCACAAA-AGTATTCTTCTTTTACCAACGG 355
consensus_1108#1      AAGTGGAGGACGGGGAATACTTCAAGACCCTAGCGAACAACACGATCCTATTGTTGCTAA 334
                        ** **  *       *** *  **    *  * ** *  *   * ** **        

consensus_1108#0      AAAATTATTCGAATTTTTTCGATTCATCTAAAACATCGAAAGAATACGTTAGAATAAAAT 415
consensus_1108#1      GGCATGGT--GAACGTTGGTG-TCCAACCGGA--GTCGACATCATACGC-GCTGCGATTT 388
                         **  *  ***  **   * * ** *   *   **** *  *****        *  *

consensus_1108#0      TAGATAAAGTTAATATAATTTGATTGAATATTTTTGCGATCAATTGCGTATTCTCTCCAG 475
consensus_1108#1      CGGCCATACCAAAAATAGTCTG--CGAAACGATTCACGCCC-----TGGAGCTGCACGAT 441
                        *  * *   ** *** * **   ***    **  **  *      * *    * * * 

consensus_1108#0      GATTGGGCGTAATCGAAAAACAAAGATTCTTATTCAAATAATTATTTTCACTTTGAAAGA 535
consensus_1108#1      GAGACACCCTCGTGGAAGATCATGGACAAT------------------------------ 471
                      **     * *  * *** * **  **   *                              

consensus_1108#0      TAAATAATTTTAATCTGCTTATATATTGGAATATTTTCG 574
consensus_1108#1      ---------------------------------------
                                                             




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)