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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence
[AAAATTCTGGCAATCTTTCCTCATCCGGGTAAGAGCCATTTCTTCGTGTTCAAACCTTTCATCGAAGAGTNNNCACGTCGAGGCAATGAATTGACGGTGATTTCTTATTTTCCGAGAACCGAGAAGGATGAACATCTTCCCACTTACAAGGATATCAGTTTGGCCAATAAAGAGAGTGACGTGTTTTTAAACGTAGTCAATTTGAACGAATTTAAACGGACGTCTTACATTTATGAATATTTCAGCAATATATTCATGTTNTCCTACATGAGATCCATAGCTTNNNAAAATTTGAGAAATCCAGGTGTAAAGAAACTGATCGAAAATGGGGAAAAATTCGACCTGGCACTGGTAGAGAATTTCAACACTCATTGTTTCATGAGCCTTGTGTATAAATTGAACGTACCCTTCATAGATATATCTACTCATCAGCCAATGCCATGGGCTATATATAATTTTAGACTTTCCAACGATGCCAGTTTCATACCTATGTCGTTGACTTCGATTTTAAAACCGATGAATCTTTTTTATAGAACGATAAATGCGTTGTCGCTATACGTTTCATCGGGGATATATTGGACGATTTTCCAGTGGAACGATCAGGCTAT]
[+] EMBL BI514307 [AAAATTCTGGCAATCTTTCCTCATCCGGGTAAGAGCCATTTCTTCGTGTTCAAACCTTTCATCGAAGAGTNNNCACGTCGAGGCAATGAATTGACGGTGATTTCTTATTTTCCGAGAACCGAGAAGGATGAACATCTTCCCACTTACAAGGATATCAGTTTGGCCAATAAAGAGAGTGACGTGTTTTTAAACGTAGTCAATTTGAACGAATTTAAACGGACGTCTTACATTTATGAATATTTCAGCAATATATTCATGTTNTCCTACATGAGATCCATAGCTTNNNAAAATTTGAGAAATCCAGGTGTAAAGAAACTGATCGAAAATGGGGAAAAATTCGACCTGGTACTGGTAGAGAATTTCAACACTCATTGTTTCATGAGCCTTGTGTATAAATTGAACGTACCCTTCATAGATATATCTACTCATCAGCCAATGCCATGGGCTATATATAATTTTAGACTTTCCAACGATGCC ]
[+] EMBL BI508972 [ GGTAAGAGCCATTTCTTCGTGTTCAAACCTTTCATCGAAGAGTTAGCACGTCGAGGCAATGAATTGACGGTGATTTCTTATTTTCCGAGAACCGAGAAGGATGAACATCTTCCCACTTACAAGGATATCAGTTTGGCCAATAAAGAGAGTGACGTGTTTTTAAACGTAGTCAATTTGAACGAATTTAAACGGACGTCTTACATTTATGAATATTTCAGCAATATATTCATGTTGTCCTACATGAGATCCATAGCTTGTGAAAATTTGAGAAATCCAGGTGTAAAGAAACTGATCGAAAATGGGGAAAAATTCGACCTGGCACTGGTAGAGAATTTCAACACTCATTGTTTCATGAGCCTTGTGTATAAATTGAACGTACCCTTCATAGATATATCTACTCATCAGCCAATGCCATGGGCTATATATAATTTTAGACTTTCCAACGATGCCAGTTTCATACCTATGTCGTTGACTTCGATTTTAAAACCGATGAATCTTTTTTATAGAACGATAAATGCGTTGTCGCTATACGTTTCATCGGGGATATATTGGACGATTTTCCAGTGGAACGATCAGGCTAT]
consensusID : consensus_1109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TTTTTTTTTTTTTAAACTGATATGACGATCACCCGTATTTTGCTGTATTAACACGCCAATCAAGGATAAGTTATAAGATTACTTTTGGCGGATGCAAATTTAGAATTGAGAAACTTTTGTGGAAACAATTTTTTATTTGGCACATAAGATCGGCAAAAAATCTTATTGATTCTTACTCTTGCGGAAAAAAATTATCTTTTCTCAAAAAAAAAATATCTGTCTTATTCTAAGATCTCGAACAACAGAATTATAAAGAACGATAAACGCGTTGTCGCTATACGTTTCATCGGGGATATATTGGACGATTTTCCAGTGGAACGATCAGGCTATAGTGAAAGAAATTTTCGGCCCGGATGTACCGAATGTGATGACGATAAACAAGAACGTATCCGTTTTTTTCATTAACACGCATTACACTATTCACGNNNGAGCCTCTTATCCGCCGAATGTCATCGAAGTGGGCGGAATTCACATCGAATCGAAGNGNAAACCATTGCCCCGAAACATAGCCAAATTTCTGGACGAGGCTCACGAGGGTGTTTTGTATTTCAATCTCGAAAAGTGATTTGGAAATGGGAGCAGGATGACATTCCGGAATTACC]
[+] EMBL BI505955 [TTTTTTTTTTTTTAAACTGATATGACGATCACCCGTATTTTGCTGTATTAACACGCCAATCAAGGATAAGTTATAAGATTACTTTTGGCGGATGCAAATTTAGAATTGAGAAACTTTTGTGGAAACAATTTTTTATTTGGCACATAAGATCGGCAAAAAATCTTATTGATTCTTACTCTTGCGGAAAAAAATTATCTTTTCTCAAAAAAAAAATATCTGTCTTATTCTAAGATCTCGAACAACAGAATTATAAAGAACGATAAACGCGTTGTCGCTATACGTTTCATCGGGGATATATTGGACGATTTTCCAGTGGAACGATCAGGCTATAGTGAAAGAAATTTTCGGCCCGGATGTACCGAATGTGATGACGATAAACAAGAACGTATCCGTTTTTTTCATTAACACGCATTACACTATTCACGNNNGAGCCTCTTATCCGCCGAATGTCATCGAAGTGGGCGGAATTCACATCGAATCGAAGNGNAAACCATTGCCCCGAAACATAGCCAAATTTCTGGACGAGGCTCACGAGGGTGTTTTGTATTTCAATCTCGAAAAGTGATTTGGAAATGGGAGCAGGATGACATTCCGGAATTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1109#0 AAAATTCTGGCAATCTTTCCTCATCCGGGTAAGAGCCATTTCTTCGTGTTCAAACCTTTC 60
consensus_1109#1 ---TTTTTTTTTTTTTAAACTGATATGACGATCACCCGTATTTTGCTGTATTAACACGCC 57
** * * * ** ** * * * ** * * ** *** *** *
consensus_1109#0 ATCGAAGAGTNNNCACGTCGAGGCAATGAATTGACGGTGATTTCTTATTTTCCGAGAACC 120
consensus_1109#1 AATCAAGGATAAGTTA--TAAGATTACTTTTGGCGGATGCAAATTTAGAATTGAGAAACT 115
* *** * ** * * * * ** *** * ***
consensus_1109#0 GAGAAGGATGAACATCTTCCCACTTACAAGGATATCAGTTTGGCCAATAAAGAGAGTGAC 180
consensus_1109#1 TTTGTGGA--AACAATTTTTTATTTG---GCACATAAGATCGGCAAAAAATCTTATTGAT 170
*** **** ** * ** * * ** ** * *** ** ** * ***
consensus_1109#0 GTGTTTTTAAACGTAGTCAATTTGAACGAATTTAAACGGA---CGTCTTACATTTATGAA 237
consensus_1109#1 TCTTACTCTTGCGGAAAAAAATTATCTTTTCTCAAAAAAAAAATATCTGTCTTATTCTAA 230
* * ** * ** ** * *** * *** * * * **
consensus_1109#0 TATTTC-AGCAATATATTCATGTTNTCCTACATGAGATCCATAGCTTNNNAAAATTTGAG 296
consensus_1109#1 GATCTCGAACAACAGAATTATAAAGA---ACGATAAACGCGTTGTCGCTATACGTTTCA- 286
** ** * *** * * * ** ** * * * * * * *** *
consensus_1109#0 AAATCCAGGTGTAAAGAAACTGATCGAAAATGGGGAAAAATTCGACCTGGCACTGGTAGA 356
consensus_1109#1 ----TCGGGGATATATTGGACGATTTTCCA-GTGGAACGATCAGGCT--ATAGTGAAAGA 339
* ** ** * *** * * **** ** * * * ** ***
consensus_1109#0 GAATTTCAACACTCATTGTTTCATGAGCCTTGTGTATAAATT-GAACGTACCCTTCATAG 415
consensus_1109#1 AATTTTCGGC-CCGGATGTACCGAATGTGATGACGATAAACAAGAACGTATCCGTTTTTT 398
* **** * * *** * * ** ***** ******* ** * *
consensus_1109#0 ATATATCTACTCATCAGCCAATGCCATGGGCTATATATAATTTTAGACTTTCCAACGATG 475
consensus_1109#1 TCATTAACACGCATTACACTATTCACGNNNGAGCCTCTTATCCGCCGAATGTCATCGAAG 458
** ** *** * * ** * * * ** * ** *** *
consensus_1109#0 CCAGTTTCATACCTATGTCGTTGACTTCGATTTTAAAACC----GATGAATCTTTTTTAT 531
consensus_1109#1 TGGGCGGAATTCACATCGAATCGAAGNGNAAACCATTGCCCCGAAACATAGCCAAATTTC 518
* ** * ** * ** * * ** * * * **
consensus_1109#0 AGAACGATAAATGCGTTGTCGCTATACGTTTCA---TCGGGGATATATTGGACGATTTTC 588
consensus_1109#1 TGGACGAGGCTCACGAGGGTGTTTTGTATTTCAATCTCGAAAAGTGATTTGGAAATGGGA 578
* **** ** * * * * ***** *** * *** * **
consensus_1109#0 -CAGTGGAACGATCAGGCTAT--- 608
consensus_1109#1 GCAGGATGACATTCCGGAATTACC 602
*** ** ** ** *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |