These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence [GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATATACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGCAAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA] [+] EMBL BI511662 [GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATATACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGAC ] [+] EMBL BI516058 [ TCTAATGCACCGAGCGTCGCCACAGTCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATAGAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATTAGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTTATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAAACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGTGTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGATATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGCAAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA] consensusID : consensus_1130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTATAAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA] [+] EMBL BI507281 [GCTAAACGGCTACGTGCCTTAATTACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAACTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNCAAGCGATCGAAAAATATATATGTATATATATATATTTTATAAAACGATCGATCTATTTTATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTCGTTCTCGAGTTTCTTACGTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1130#0 GTGAGAAAACGCGAAGAAAAAAGAAAAAAAGAAAAAAAAACTTTTGCACCCACCTAATAT 60 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ACCGATAGAGCTAGCCGCGGCGAAGAAGAAAATTTTCTAATGCACCGAGCGTCGCCACAG 120 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 TCGCCGTAATTAAGGCACGTAGCCGTTTAGCTAGCAGCTAATGATCGACGGCCGAAAATA 180 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 GAAGCACGGTACAGACTCGTATGTATGTATGTATGTATGTCGATGTGACCTTTCGATATT 240 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 AGTCGAGTAAGGCTTCGAGGTAAAGGCCTTAAAAAAAAACTATCCTGCCCCCTCGAATTT 300 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ATTTTCATCCCCCCCCTCCCTCGGAGAGACGCCATTGGATCAGGAAAATTTCGGATCGAA 360 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 ACTCGAAATATTTCTCGAATTCGTAGAGACGTATATACATATATATATATATATGTGTGT 420 consensus_1130#1 ------------------------------------------------------------ consensus_1130#0 GTATACAATTTGGAAGAAAGCGAGGAAAAGGTAATAAAAATTTATCGTATATAGGATGAT 480 consensus_1130#1 ---------------------------------------GCTAAACGGCTACGTGCCTTA 21 * * ** ** * consensus_1130#0 ATCGATGGCGACGACNNNNAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA 540 consensus_1130#1 ATT-ACGGCGACGACGAAGAACGGAAAATATGGCCGATGTACCGTTGTCGAGAATGTAAA 80 ** * ********* ***************************************** consensus_1130#0 CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGNNGGAACAATGTGCAATGTTGC 600 consensus_1130#1 CTCGAGTCCAAGTACGCGCGCGCTGTCGATCAATTTTGAAGGAACAATGTGCAATGNNNC 140 ************************************** **************** * consensus_1130#0 AAGCGATCGAAAAATATATATGTATATATATATATATTTTATAAAACGATCGA------- 653 consensus_1130#1 AAGCGATCGAAAAATATATATGTATATATATATAT--TTTATAAAACGATCGATCTATTT 198 *********************************** **************** consensus_1130#0 ------------------------------------------------------------ consensus_1130#1 TATAAAACAAGAATCGATAGTACGCGTTGAAATTCTTAAAGGATCAAGAAATCGTGTTTC 258 consensus_1130#0 --------------------------- consensus_1130#1 GTTCTCGAGTTTCTTACGTAAAAAAAA 285 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |