These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATTACGGTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTATAAGTTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAATTTGGAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATCCTGGATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGTACAGAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAAAAGATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATTACAATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTTGTACTAAAGAGAATAAATA] [+] EMBL BI509966 [ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATTACGGTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTATAAGTTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAATTTGGAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATCCTGGATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGTACAGAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAAAAGATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATTACAATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTTGTACTAAAGAGAATAAATA] consensusID : consensus_1137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 325 fasta sequence [GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGGATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAACCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGAAAAAAAA] [+] EMBL BI506065 [GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGGATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAACCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGAAAAAAAA] [+] EMBL BI517067 [GTGACTAGTGCGTAAATCTTATATAAAGTCTTTCACTTGGGAACACAATGGTCAGCAAGGATTCGAAAATGGTCACTCCGGAGATGGCAAATCCTTATCTTAAACCGCCGAGTATGTCAACCAGCCAGTCTTTAAAGACTTTTATTTACAATCGTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCTATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTCAAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTTAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1137#0 ---ATTATTATCGAATTTTTATCGTTTATTTTTTCATTAGATAAGTTTGAAAAACAAATT 57 consensus_1137#1 GTGACTAGTGCGTAAATCTTAT-ATAAAGTCTTTCACTTGGGAACAC--AATGGTCAGCA 57 * ** * ** * **** * * * ***** * * ** ** * consensus_1137#0 ACGGTTTAATCCTTTGCCTGATCACAATAACAACAATTTTCTATTTATTTGTGAACTTAT 117 consensus_1137#1 AGGATTCGAAAATGGTC---ACTCCGGAGATGGCAAATCCTTATCT-----TAAACCGCC 109 * * ** * * * * * * *** * *** * * *** consensus_1137#0 AAGTTATTCTAATGATTTATCACTGAATTGAATTGTTTTTATTTTGATCACTTCACAAAT 177 consensus_1137#1 GAGTATGTCAACCAGCCAGTCTTTAAAG------ACTTTTATTT----------ACAATC 153 *** ** * ** * ** ******** **** consensus_1137#0 TTGGAAGAAGAAATAAAATGTGACGAATAAAATGTTTTGCAGGTAAAATAGGATTGTTCT 237 consensus_1137#1 GTGAAACTGGTGCCTTTTTAGGCAGAACAGCTAGTAGTTGGGGTAAAATAGGATTGTTCT 213 ** ** * * * *** * ** * ******************* consensus_1137#0 ATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTC 297 consensus_1137#1 ATTTGATATTTTACGGGGTGCTAGCCGCACTGGTTGCAATTTGTTTTTGGGGTTTTTTTC 273 ************************************************************ consensus_1137#0 AAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGATAATTGGGACAAATC 357 consensus_1137#1 AAACGTTAGATCCAAGGATACCAAGATGGCAACTAGAACGTTCGAAAAAAAA-------- 325 ********************************************* ** consensus_1137#0 CTGGATTAGGATTTAGACCACAACCGCCATTAGAAAATGTGGAGAGTACGTTAATTTGGT 417 consensus_1137#1 ------------------------------------------------------------ consensus_1137#0 ACAGAGGAACCGATAGCGAGAATTTTAAATATTGGATCGATTCTCTGGAATCGTTCTTAA 477 consensus_1137#1 ------------------------------------------------------------ consensus_1137#0 AAGATTATATAACGCCAGGTTCGATTCCTGGTCTCGGTGCAAATATTAATAAATGTGATT 537 consensus_1137#1 ------------------------------------------------------------ consensus_1137#0 ACAATCAACCACCACCTCCAGGTAAAGTGTGCGACGTTGATGTTAAAAATTGGTATCCTT 597 consensus_1137#1 ------------------------------------------------------------ consensus_1137#0 GTACTAAAGAGAATAAATA 616 consensus_1137#1 ------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |