These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence [CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTATGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAATTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCCTGA-CTTGAANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTCCTTGACGTNGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTTAAGCATCGCATATTTTCGGCCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAATGCGTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCTGGGTTAGGATAAATATGTGGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA] [+] EMBL BI512624 [CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTATGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAATTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCCTGATCTTGAATCCGTCAGCTCTTTTCAAAATAATGTCGGCTTGTAGTCTGAACTCGGATTCCTTGACGTCGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTTAAGCATCGCATATTTTCGGCCTACACATGATCGTGGTCCAGCCGAGAATGGCACAAATGCGTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCTGGGTTAGGATAAATATGTGGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA] [-] EMBL BG101548 [ tGTTCGAGCCTGA CTTG ANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTCCTTGACGTNGGATCTTACGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTTAAGCATCGCATATTTTCGGCCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAATGCGTAATAGTGACGATTCGCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAAGACATCTGGGTTAGGATAAATATGTGGCTGTCGGTGCA ] consensusID : consensus_1145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [ATTCGAGCCTGACTTGATCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAACTCGGATTCCTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATCTTGAGTTTAAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATGNCACAAATGCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAANACNTCTGGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT] [-] EMBL BG101579 [ATTCGAGCCTGACTTGATCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAACTCGGATTCCTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATCTTGAGTTTAAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATGNCACAAATGCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAANACNTCTGGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1145#0 CGCATGTGCAAAAAGTATGGCGTTAATGAAAACCATATACACGCATAATAAAATATATTA 60 consensus_1145#1 ------------------------------------------------------------ consensus_1145#0 TGATATGTTTAATTCACCGCATGAAAAGCCCACCAATCGTGTTTTTATTTATAATAATAA 120 consensus_1145#1 ------------------------------------------------------------ consensus_1145#0 TTCATATATTATCTTTGTACTTTTATGCAGTACTAGCTACTTGTTTCCTAGGTTCGAGCC 180 consensus_1145#1 ---------------------------------------------------ATTCGAGCC 9 ******** consensus_1145#0 TGACTTGAANCCGTCAGCTCTTTTCAAAATAATGTCGGNTTGTAGTCTGAACTCGGATTC 240 consensus_1145#1 TGACTTGA-TCCGTCAGCTCTTTTCAAAATAATGNCGGNTTGTAGNCTGAACTCGGATTC 68 ******** ************************ ********** ************** consensus_1145#0 CTTGACGTNGGATCTTANGCGGAAGTTTCTTAAAATTGTTGACAAAACAATCTTGAGTTT 300 consensus_1145#1 CTTGACGTCGGATCTTACGCGGAAGNTTCTTAAAATNGTTGACNAAACAATCTTGAGTTT 128 ******** ******** ******* ********** ****** **************** consensus_1145#0 AAGCATC-GCATATTTTCGG-CCTACACATGATCGTGGNCCAGCCGAGAATGGCACAAAT 358 consensus_1145#1 AAGCATCTGCATATTTTCGGGCCTACACATGATCGNGGACCANCCGAGAATGNCACAAAT 188 ******* ************ ************** ** *** ********* ******* consensus_1145#0 GCGTAATAGTGACGATTCGCGNNNTTTTCTGGTAAGAAATTGTCAGGATCGAAGNCATCT 418 consensus_1145#1 GCGNAATAGTGACNATTCCCGGTTTTTTCTGGTAAGAAATTGTCAGGATCGAANACNTCT 248 *** ********* **** ** ***************************** * *** consensus_1145#0 GGGTTAGGATAAATATGT--GGCTGTCGGTGCAGTTTAAAAGTACCAATAACAACCGTA 475 consensus_1145#1 GGNTTAGGATAAATATGNAGGNGTGTCGGNGCAGATT---------------------- 285 ** ************** * ****** **** ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |