These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence [ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTTAATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCATATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAGTTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG] [+] EMBL BI511379 [ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTTAATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTC ] [+] EMBL BI509433 [ TTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCATATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAGTTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG] consensusID : consensus_1161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GTAAAAAAAAATTTTCATTGTTATTCAAAAGAATGGCTATTTCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTT] [+] EMBL BI946505 [GTAAAAAAAAATTTTCATTGTTATTCAAAAGAATGGCTATTTCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1161#0 ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTT 60 consensus_1161#1 --------------------GTAAAAAAAAATTTTCATTG---TTATTCAAAAG------ 31 * ** ******* *** ***** *** consensus_1161#0 AATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCG 120 consensus_1161#1 AATGGCTATT----TCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCG 87 *** * *** ********************************************** consensus_1161#0 CGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCA 180 consensus_1161#1 CGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCA 147 ************************************************************ consensus_1161#0 CGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCA 240 consensus_1161#1 CGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCA 207 ************************************************************ consensus_1161#0 AATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACA 300 consensus_1161#1 AATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACA 267 ************************************************************ consensus_1161#0 TACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAA 360 consensus_1161#1 TACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAA 327 ************************************************************ consensus_1161#0 TAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAA 420 consensus_1161#1 TAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAA 387 ************************************************************ consensus_1161#0 TCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCA 480 consensus_1161#1 TCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAG--- 444 ********************************************************* consensus_1161#0 TATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAA 540 consensus_1161#1 ------------------------ATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAA 480 ************************************ consensus_1161#0 TAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAG 600 consensus_1161#1 TAGATATAGGAAAATTTTGTT--------------------------------------- 501 ********************* consensus_1161#0 TTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG 643 consensus_1161#1 ------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |