These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence [AATTTGAAATATTTATTAGTTTTAGATAATATTGATAAAAAATTTATCTTAATTCAATTTCACTTATAATTTCACTTATAATTATAACTGGAATCATTTATATATATATATATGAATTTTCTATTTGCTTTATTCAAATTTTATTTTTAATAGTTTTTTAATGCA-GAATTTATATTGCAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAATGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTTCTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTTATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAAAAGCAGATCTCTTGCGTATTTCTTTTAGAGTCTTTCTGTTGGCTTGATAAGGTGTTAATGCTCTTCTAAGAGCTCTAGTTTTTTTTGGCCTTAAATCCAAAGGCTTATATTTATGATTTTTATACAACAAACGCAAATTTTCCTTTTGCTTTTGATGCATAATAATATATACCCTAGCTATTGCTTTCCTTACCACACGGATTTTCGAAAGTTTTGATGCAGCACCACCAGTAACTTTTGCCACTCGAAGATTTGTCAACTCAGTTTTGAGTTCTTCCAGTTGCTTGAGCAACTCATTTTTATCTTTTGTCCTCAGATCAGTACACTTAACCTTACCCATTTTGTTGTAATAC] [+] EMBL BI515104 [AATTTGAAATATTTATTAGTTTTAGATAATATTGATAAAAAATTTATCTTAATTCAATTTCACTTATAATTTCACTTATAATTATAACTGGAATCATTTATATATATATATATGAATTTTCTATTTGCTTTATTCAAATTTTATTTTTAATAGTTTTTTAATGCATGAATTTATATTGCAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAATGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTTCTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTTATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAAAAGCAGATCTC ] [-] EMBL BE844563 [ ATTTTTAATAGTTTTTTAATGCA GAATTTATATTGCAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAATGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTTCTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTTATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAAAAGCAGATCTCTTGCGTATTTCTTTTAGAGTCTTTCTGTTGGCTTGATAAGGTGTTAATGCTCTTCTAAGAGCTCTAGTTTTTTTTGGCCTTAAATCCAAAGGCTTATATTTATGATTTTTATACAACAAACGCAAATTTTCCTTTTGCTTTTGATGCATAATAATATATACCCTAGCTATTGCTTTCCTTACCACACGGATTTTCGAAAGTTTTGATGCAGCACCACCAGTAACTTTTGCCACTCGAAGATTTGTCAACTCAGTTTTGAGTTCTTCCAGTTGCTTGAGCAACTCATTTTTATCTTTTGTCCTCAGATCAGTACACTTAACCTTACCCATTTTGTTGTAATAC] consensusID : consensus_1166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [TTTTTTTTTTTTTATCATAATACGATTAAAAATATTTAATAATTTATGTAAACAGAATGATCTTTAAAAATAATCNNNTATATAACCTTACTTTTTAAGAACAAGAGATTTTTTCATTTTTATTGCAAATTTTTTTGTTTGATTTATTATATGTTTTAATATATATATATATATATATGTATATATAGTGNNTGTGTGCGCGCGCGCGCGGTAAGGTTAAGTGTACTGATCTGAGGACAAAAGATAAAAATGAGTTGCTCAAGCAACTGGA] [+] EMBL BI512393 [TTTTTTTTTTTTTATCATAATACGATTAAAAATATTTAATAATTTATGTAAACAGAATGATCTTTAAAAATAATCNNNTATATAACCTTACTTTTTAAGAACAAGAGATTTTTTCATTTTTATTGCAAATTTTTTTGTTTGATTTATTATATGTTTTAATATATATATATATATATATGTATATATAGTGNNTGTGTGCGCGCGCGCGCGGTAAGGTTAAGTGTACTGATCTGAGGACAAAAGATAAAAATGAGTTGCTCAAGCAACTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1166#0 AATTTGAAATATTTATTAGTTTTAGATAATATTGATAAAAAATTTATCTTAATTCAATTT 60 consensus_1166#1 ---------TTTTTTTTTTTTTATCATAATAC-GATTAAAAATATTTAATAATTTATGTA 50 * *** ** *** ****** *** ****** * * ***** * * consensus_1166#0 CACTTA-TAAT-TTCACTTATAATTATAACTGGAATCAT-TTATATATATATATATGAAT 117 consensus_1166#1 AACAGAATGATCTTTAAAAATAATCNNNTATATAACCTTACTTTTTAAGAACAAGAGATT 110 ** * * ** ** * ***** * ** * * * * ** * * ** * consensus_1166#0 TTTCTATTTGCTTTATTCAAATTTTATTTTTAATAGTTTTTTAATGCAGAATTTATATTG 177 consensus_1166#1 TTTTCATTTTTATTGCAAATTTTTTTGTTTGATTTATTATATGTTTTAATATATATAT-- 168 *** **** ** * **** *** * * ** * * * * ** ***** consensus_1166#0 CAGGGTAACGACGAATCTTGTTTATCAATTCTGAATAACTTTTACAATGATGGAATTAAA 237 consensus_1166#1 --ATATATATATGTA---TATATAGTGNNTGTGTGCG-CGCGCGCG-CGGTAAGGTTAAG 221 ** * * * * * ** * ** * * * * **** consensus_1166#0 TGGCATGATGTAGCTTGCCATCATCGAAAACCATTTGTCTGTGAGGATAGTGATGAACTT 297 consensus_1166#1 TGTACTGATCTGAGG-ACAAAAGATAAAAATGAGTTGCTCAAGCAACTGGA--------- 271 ** **** * * * **** * *** * * * consensus_1166#0 CTGAACTTTGTGCTTTCTAGAAACCCTGGCATTCGTCTTTAAATTTTTACAGCTTCTGTT 357 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 ATTTCTTGAATATTAAGTACCTTGCAATTTACACCTTTAAAGCATACTTCCTTGGAGGAA 417 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 AAGCAGATCTCTTGCGTATTTCTTTTAGAGTCTTTCTGTTGGCTTGATAAGGTGTTAATG 477 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 CTCTTCTAAGAGCTCTAGTTTTTTTTGGCCTTAAATCCAAAGGCTTATATTTATGATTTT 537 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 TATACAACAAACGCAAATTTTCCTTTTGCTTTTGATGCATAATAATATATACCCTAGCTA 597 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 TTGCTTTCCTTACCACACGGATTTTCGAAAGTTTTGATGCAGCACCACCAGTAACTTTTG 657 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 CCACTCGAAGATTTGTCAACTCAGTTTTGAGTTCTTCCAGTTGCTTGAGCAACTCATTTT 717 consensus_1166#1 ------------------------------------------------------------ consensus_1166#0 TATCTTTTGTCCTCAGATCAGTACACTTAACCTTACCCATTTTGTTGTAATAC 770 consensus_1166#1 ----------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |