These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1172#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGGAGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGAGGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG] [+] EMBL BE844531 [ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGGAGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGAGGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG] consensusID : consensus_1172#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 434 fasta sequence [CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCACGACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATNNNNCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGAGTAGAC] [+] EMBL BI506489 [CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCACGACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATNNNNCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGAGTAGAC] [+] EMBL BI506393 [CGAGCCGTTTCTAAAATAATAGAAGAACAACAACTGTTGAAGTATATAAATAAGGATCACGACGTTTCGCGAAAGTATGGACGAACAAGTATGGAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGGGAGAGGGGGGGGACAAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTCCCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGCTGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTGCTATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGATAATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGAGTAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1172#0 ATGCGTTGACAGTAATAAAAGTACTATTATAGAAATTATTACACTTGCACCGAATCGAGG 60 consensus_1172#1 ------------------------------------------------------------ consensus_1172#0 AGCGATTATATATTCATCGTTGCGAACGAGCCGTTTCTAAAATAATAGAAGAACAACAAC 120 consensus_1172#1 --------------------------CGAGCCGTTTCTAAAATAATAGAAGAACAACAAC 34 ********************************** consensus_1172#0 TGTTGAAGTATATAAGTAAGGATCACGACGTTTCACTCGCGAAAGTATGGACGAACAAGT 180 consensus_1172#1 TGTTGAAGTATATAAATAAGGATCACGACGTTT----CGCGAAAGTATGGACGAACAAGT 90 *************** ***************** *********************** consensus_1172#0 ATGGAGGGAAAGGGAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCGAGGAGGGGAGA 240 consensus_1172#1 ATGGAGG------GAAAGTAGGAAAGGTGGGGAGAAAAGCTTGGTATCG------GGAGA 138 ******* ************************************ ***** consensus_1172#0 GGGGAGGGGAGGGGGGAGACAAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTC 300 consensus_1172#1 GGGGGGGGACA---------AAAAAAAAATATCATGCTTAAAGTTTCTCGGTTCGCCGTC 189 **** *** **************************************** consensus_1172#0 CCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGC 360 consensus_1172#1 CCGAATTTCCATTTTTCGAAACGAAATTGGATCAACTTGAAGGGAAGGTGGATGGAAAGC 249 ************************************************************ consensus_1172#0 TGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATTTTTGC 420 consensus_1172#1 TGGTAAATATTATTACAGATATTATTCAAACTGATATTATCGGTCATGGCATATNNNN-C 308 ****************************************************** * consensus_1172#0 TATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTTGG------------------ 462 consensus_1172#1 TATCCTGCATATACTACGTTCATTCTCCAGATTCTATTTGGGACATGTTTCCTGTGTGAT 368 *************************************** ** consensus_1172#0 ------------------------------------------------------------ consensus_1172#1 AATTGTTAACTCGATTTTAGCGCTTTAAGTATGCACGTATGAGAATATGCGAGTATGAGA 428 consensus_1172#0 ------ consensus_1172#1 GTAGAC 434 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |