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Apis mellifera
cluster # 118 cluster # 118       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_118#0 length = 854 sequences # 4  
consensus_118#1 length = 813 sequences # 3  

consensusID : consensus_118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 854
fasta sequence
                              [TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT---CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI504531             [TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT   CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCT                                                                                                                                                                                                                   ]
[+] EMBL BI510086             [                                                                                                                                                                                                                                                                                                          GTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTCAGCGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAATAAAAAAA]
[+] EMBL BI508653             [                                                                                                                                                                                                                                                                                                          GTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTTGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT   CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCC  AAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAAA       ]
[+] EMBL BI504813             [                                                                                                                                                                                                                                                                                                                                                                      GCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT   CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCCTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAA                                        ]


>consensus_118#0 TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGA ATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCG AGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAG AATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACA GTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGT TAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGC GCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTT TCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGG TTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTCGACCAGCCGCA GCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAA CTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAG ACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTC TACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTT CGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAA AAAAAAAAAAAAAA



consensusID : consensus_118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 813
fasta sequence
                              [TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGCGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTATAGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAGAACGAGTTTTTTTAAATTTAATCGTTTTCCTGC]

[+] EMBL BI503412             [TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCTTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGC                                                                                                                                                        ]
[+] EMBL BI507398             [            CGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACA                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI508380             [                                                                                                                                                                                                                                                                                                                                          TGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGCGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTATAGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAGAACGAGTTTTTTTAAATTTAATCGTTTTCCTGC]


>consensus_118#1 TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTG TAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGAC GTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGG CGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTAT AGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAG AACGAGTTTTTTTAAATTTAATCGTTTTCCTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_118#0      -----------TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA 49
consensus_118#1      TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA 60
                                *************************************************

consensus_118#0      AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT 109
consensus_118#1      AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT 120
                     ************************************************************

consensus_118#0      TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT 169
consensus_118#1      TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT 180
                     ************************************************************

consensus_118#0      AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG 229
consensus_118#1      AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG 240
                     ************************************************************

consensus_118#0      AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC 289
consensus_118#1      AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC 300
                     ************************************************************

consensus_118#0      TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA 349
consensus_118#1      TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA 360
                     ************************************************************

consensus_118#0      CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT 409
consensus_118#1      CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT 420
                     ************************************************************

consensus_118#0      CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG 469
consensus_118#1      CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG 480
                     ************************************************************

consensus_118#0      TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTC 529
consensus_118#1      TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT- 539
                     *********************************************************** 

consensus_118#0      GACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACC 589
consensus_118#1      GTAAGTCTATTGCCAGATA-------TACATAACGATGTGGTC-ATAAAATGA----ACT 587
                     *     *    ** *****       ** *  * ** *  *   *** ****     ** 

consensus_118#0      TGAAATGAA-AACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAAC 648
consensus_118#1      TGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGA-ATAGCAG----AAT 642
                     *** ** **  ** * *    **  * * *    *  *  ** *  *   ***    ** 

consensus_118#0      GACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCT 708
consensus_118#1      AAAGTGCGAGATAC----GTGGCGTGATTTATCGATTATTGTCAGAGA-AAAATAATTCA 697
                      * *   **** **     *** **   ***** *  *    ** *   ***   **** 

consensus_118#0      ACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTC 768
consensus_118#1      A--ATAATCACTCGGAAGATGGTATAGCTAA--------AATTGTTCTTGAGACTTCTTG 747
                     *  **          *  * * * *******        * ** **  *    *  *** 

consensus_118#0      TTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAA 828
consensus_118#1      GTGTAAGTTGTTT-CAAGTTTGACATTGC-----GGAAGAACGAGTTTTTTTAAATTTAA 801
                      * *   ** **  *   ***  ****         ** **  *      *****   **

consensus_118#0      AAATAATAAAAAAAAAAAAAAAAAAA 854
consensus_118#1      TCGTTTTCCTGC-------------- 813
                        *  *                   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)