These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 854 fasta sequence [TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT---CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAA] [+] EMBL BI504531 [TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCT ] [+] EMBL BI510086 [ GTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTCAGCGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAATAAAAAAA] [+] EMBL BI508653 [ GTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTTGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCTTCGCCCTTTTTCCATTTTTTCC AAAAAAAAAAAAAAATTAAAAAAAAAAATAATAAAAAAAAAAAA ] [+] EMBL BI504813 [ GCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT CGACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACCTGAAATGAAAACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAACGACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCTACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTCTTATTCCTTCCTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAA ] consensusID : consensus_118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence [TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGCGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTATAGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAGAACGAGTTTTTTTAAATTTAATCGTTTTCCTGC] [+] EMBL BI503412 [TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCTTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGC ] [+] EMBL BI507398 [ CGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAAAAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTTTGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAATAGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAGAAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCCTTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACA ] [+] EMBL BI508380 [ TGGTCGACTCAAGTGGTGTATGGGCGGAAACGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGATCACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCGTACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTGTAAGTCTATTGCCAGATATACATAACGATGTGGTCATAAAATGAACTTGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGAATAGCAGAATAAAGTGCGAGATACGTGGCGTGATTTATCGATTATTGTCAGAGAAAAATAATTCAAATAATCACTCGGAAGATGGTATAGCTAAAATTGTTCTTGAGACTTCTTGGTGTAAGTTGTTTCAAGTTTGACATTGCGGAAGAACGAGTTTTTTTAAATTTAATCGTTTTCCTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_118#0 -----------TCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA 49 consensus_118#1 TCCATCTCGGTTCGAATGTCTTCTCTTCGACTCGACTAAATGGAAATGATAAAATCGTAA 60 ************************************************* consensus_118#0 AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT 109 consensus_118#1 AAGAATCAAGAATCACGGTCATTGTGAGTGACTTTAAGGATAGATAGATTCGATTTCGTT 120 ************************************************************ consensus_118#0 TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT 169 consensus_118#1 TGTGATACGCGAGTGATTCGCAAGTGTGATTCATAACTGCGCGATGTGTTACGATGAAAT 180 ************************************************************ consensus_118#0 AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG 229 consensus_118#1 AGAATAGGTAGAATAATCAGATTGAGAAGAAGGGGTCGACTTGCTTTCAGACAAGATGAG 240 ************************************************************ consensus_118#0 AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC 289 consensus_118#1 AAGCGCGAACAGTTTGGACCAATATAACGACGATGACTTCTTCAGCGGTGGTCCCTGCCC 300 ************************************************************ consensus_118#0 TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA 349 consensus_118#1 TTCTTGTCGGTTAGCCATTAACAAGGAAACTGGTCGACTCAAGTGGTGTATGGGCGGAAA 360 ************************************************************ consensus_118#0 CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT 409 consensus_118#1 CGATACTTGGCGCTTCCGAGTGAAATTAATGCTTCTGATTCCCGCCGTGTTATTGCCGAT 420 ************************************************************ consensus_118#0 CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG 469 consensus_118#1 CACGATAATTTTCATCGCCCTCTCGAGGTCACAGGTGATTGGCAAAACTCCTTATCATCG 480 ************************************************************ consensus_118#0 TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGTC 529 consensus_118#1 TACGCATTTGGTTCACGCGACTAAAAGACAGGACGAGAGAACCGAGGAGACTTTTCCGT- 539 *********************************************************** consensus_118#0 GACCAGCCGCAGCGAGATAGAGCGGGTAGAAGAAGAGGAAGAAGATAGAATGCTTATACC 589 consensus_118#1 GTAAGTCTATTGCCAGATA-------TACATAACGATGTGGTC-ATAAAATGA----ACT 587 * * ** ***** ** * * ** * * *** **** ** consensus_118#0 TGAAATGAA-AACTTACTACGCGCCGATGGAATCTCTACTTTCGCCACGACAGCTTCAAC 648 consensus_118#1 TGATATTAACGACGTCCGGTTCGTTGGTTGCTCGTAGAGATTTGA-ATAGCAG----AAT 642 *** ** ** ** * * ** * * * * * ** * * *** ** consensus_118#0 GACGCAAGAGAGACCTGGATGGGGTACATTATCCAAAACAAGCAAATTCAAAGCGATTCT 708 consensus_118#1 AAAGTGCGAGATAC----GTGGCGTGATTTATCGATTATTGTCAGAGA-AAAATAATTCA 697 * * **** ** *** ** ***** * * ** * *** **** consensus_118#0 ACAATGCGATTCTACAGAACGCTCTAGCTAACTGATACCATTTTTTTCTTCCTCCGCTTC 768 consensus_118#1 A--ATAATCACTCGGAAGATGGTATAGCTAA--------AATTGTTCTTGAGACTTCTTG 747 * ** * * * * ******* * ** ** * * *** consensus_118#0 TTATTCCTTCTTCGCCCTTTTTCCATTTTTTCCAAAAAAAAAAAAAAAAATTAAAAAAAA 828 consensus_118#1 GTGTAAGTTGTTT-CAAGTTTGACATTGC-----GGAAGAACGAGTTTTTTTAAATTTAA 801 * * ** ** * *** **** ** ** * ***** ** consensus_118#0 AAATAATAAAAAAAAAAAAAAAAAAA 854 consensus_118#1 TCGTTTTCCTGC-------------- 813 * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |