These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGCCGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCC] [+] EMBL BI505619 [CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGCCGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAA ] [+] EMBL BI507588 [ TTTCTTGATTGGAAAGAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAAATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGATAGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGATCGATCTCGAAAAAATTGAAAAAATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCAAGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCTTGGCGGCGGTGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAAGAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATGTTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTAAAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCC] consensusID : consensus_1194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGTATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTTTTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAGATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA] [+] EMBL BI504858 [TATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCTTTCCCTTGTATATCAACAGGAATTTATGGATATCCACAAAGACCAGCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAACAAAAATGCTGTGGATAGAATAATTTTTTGCCTATTTTTGAAAACCGACAAAGATATATACGAAGAATTGTTACAAAAATATTTTGCTATTGATTAGATTACTCTCTAACAGAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTATACACATCGAATAATATTCATAGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1194#0 CGAGTGGGGGACTATGTTGACTCACAGAAAAATTATTTCTGATTTACAGGCGAACATCGC 60 consensus_1194#1 ------------------------------------------------------------ consensus_1194#0 CGATCGTTTTGCAGTTATCGCCGTAGTTCGATCGACCATTCAGAATTTCTTGATTGGAAA 120 consensus_1194#1 ---------------TATGAAAACAGTTTAATCGTTGCTAAAGAAAATC--AATTGCGCA 43 *** **** **** * **** ** **** * consensus_1194#0 GAATTTTGTTACATTTGCTAAACCTCAATCAAGAATGTCGTTCGAAGTTGAAAAACAGAA 180 consensus_1194#1 CAATTGCTTTCCCT----TGTATATCAA-CAGGAATTTA--TGGATATCCACAAAGACCA 96 **** ** * * * * **** ** **** * * ** * * *** * * consensus_1194#0 ATTCTTGAACATGCCGCCAGAAGAAAAAAGAAAATATTATAAGGGAATTATAAATACGAT 240 consensus_1194#1 GCAGCTAAAGTGGCTTTATTGACAGTCAAGAAGTTCCTAACAGAGAAC-AAAAATGCTGT 155 * ** ** * * ***** * ** ** *** * **** * * consensus_1194#0 AGACGAAATACCAACATGGTTTCAATACTGGAATAAAAATAAAACAAATATAAATATGAT 300 consensus_1194#1 GGATAGAATA-----ATTTTTTGCCTATT---TTTGAAAACCGACAAAGATATATACGAA 207 ** **** ** *** ** * * *** ***** *** *** ** consensus_1194#0 CGATCTCGAAAAAATTGAAAAGATCAACGAAGAAATGGCTAATAAAATTTCGATATGGCA 360 consensus_1194#1 GAATTGTTACAAAAATATTTTGCT-------------ATTGATTAGATTACTCTCTAACA 254 ** * **** * * * * ** * *** * * * ** consensus_1194#0 AGGAGATATTACATCTCTTGAGATAGATGCGATCGTCAATGCAGCAAACTCGAGTCTTCT 420 consensus_1194#1 --GAAGTATCCCATGTTTTGAGATTAAACTCGAAACAAACAGAGTGAAACTGTATCAGTA 312 ** *** *** * ******* * ** ** ** * ** consensus_1194#0 TG-GCGGCGG-TGGAGTTGATGGAGCTATACACAAAGCTGCTGGACCTAATTTGAAAAAA 478 consensus_1194#1 TACACATCGAATAATATTCATAGAAAAAAA------------------------------ 342 * * ** * ** ** ** * * consensus_1194#0 GAATGCGCTACTTTAGGTGGATGTCATGTCGGTGAAGCTAAAATAACCGGTGGTTATATG 538 consensus_1194#1 ------------------------------------------------------------ consensus_1194#0 TTGCCAGCAAAGTATGTGATTCATACTGTTGGTCCACAAGGGGAAAAACCAGAAAAATTA 598 consensus_1194#1 ------------------------------------------------------------ consensus_1194#0 AAGGAATGTTATGAAAACAGTTTAATCGTTGCTAAAGAAAATCAATTGCGCACAATTGCT 658 consensus_1194#1 ------------------------------------------------------------ consensus_1194#0 TTCCC 663 consensus_1194#1 ----- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |