These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 694 fasta sequence [TAACGATGGTTTAATTAATGTTTTTATTTAGATCACTATTTATATATCAAAGAATTATATTTTCCTTCCCACTTTCTCTTTATTACAATAAAATCATTTGTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTAAGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC--TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAAT-AAAAAAAAAAAAAAATTTGACTTGATACGGATTCACAGATGTTGATGAAGAAAACATGTTGTTGTCTCTAGA] [-] EMBL BI504143 [TAACGATGGTTTAATTAATGTTTTTATTTAGATCACTATTTATATATCAAAGAATTATATTTTCCTTCCCACTTTCTCTTTATTACAATAAAATCATTTGTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTNNNAAGCGCACGTGAAGCAGCTGCCTTNNNATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTT ] [-] EMBL BI514667 [ CATTTGTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTAAGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATCTATATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGC ] [+] EMBL BI507345 [ TTTTTTATTATGTTAATTTTGCTAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTAAGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTAACCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAAAAAAAa ] [-] EMBL BI505144 [ GTAGTAGACTGTCTCACGCAACTCCGGTGGAAGAACGAGCCAACGAGAAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTANNCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGACNAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAAT AAAAAAAAAAAAAAATTTGACTTGATACGGATTCACAGATGTTGATGAAGAAAACATGTTGTTGTCTCTAGA] [-] EMBL BI509363 [ AAAAGTATATACACAGGCACACACATTCGCGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAAAATGATAGCAATTNNNCATATGTCTATGAGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAATATC TATATATATATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGACCAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAATAAAAAAAAAAAAAAAATTTGACTTGATACGGATTCACAGATGTTGATGAAGAAAA ] consensusID : consensus_121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GTAGGTATATTATACATTAAAGACTCGATACTTAACACTTGATGAACACTTTAATGATACATGTACACACGTACACACACGTATATAATATATATATAATATAATACGTACATATATTACAGAGAAACGCAATATAAATACGAATACATACACGACAAAAGATTACATAATAACACATACACACACACACATACGTACAGAAACACGCCACCAGGTGGATACACTATGTATGGTCATTAATTTATTCTGACCGTAGTGCTAATTGTACTTAGCATTTACGTAGATGACACTAATTGCCTAGGTCGACCAGCTCGTCCGGGGTTCCTGTTGCCGTGCGCCGTGTTACACCCTCTCCTCCTCTGACACAACTCCTCTCCCTCCTTCCATCCACCGCGTTCGTTTCCTTCCCGCGGCGAGGAAGCCATGATGATATCGCCGTCGCGGTATAAATTTCCTAGCGCGTGGTGCCGCCGAACGGCAAGGGCGAGAACCCTGGTCGATCAAATTTCGCCTAATAATGAAAACGACAAAAGGAAAAAAA] [+] EMBL BI507849 [GTAGGTATATTATACATTAAAGACTCGATACTTAACACTTGATGAACACTTTAATGATACATGTACACACGTACACACACGTATATAATATATATATAATATAATACGTACATATATTACAGAGAAACGCAATATAAATACGAATACATACACGACAAAAGATTACATAATAACACATACACACACACACATACGTACAGAAACACGCCACCAGGTGGATACACTATGTATGGTCATTAATTTATTCTGACCGTAGTGCTAATTGTACTTAGCATTTACGTAGATGACACTAATTGCCTAGGTCGACCAGCTCGTCCGGGGTTCCTGTTGCCGTGCGCCGTGTTACACCCTCTCCTCCTCTGACACAACTCCTCTCCCTCCTTCCATCCACCGCGTTCGTTTCCTTCCCGCGGCGAGGAAGCCATGATGATATCGCCGTCGCGGTATAAATTTCCTAGCGCGTGGTGCCGCCGAACGGCAAGGGCGAGAACCCTGGTCGATCAAATTTCGCCTAATAATGAAAACGACAAAAGGAAAAAAA] consensusID : consensus_121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [TCTCGCCCTTGCCGTTCGGCGGCACCACGCGCTAGGAAATTTATACCGCGACGGCGATATCATCATGGCTTCCTACCGCGGGAAGGAAACGAACGCGGTGGAAGGAAGGAAGGAGGGAGAGGAGTTGTGTCAGAGGAGGAGAGGGTGTAACACGGCGCACGGCAACAGGAACCCCGGACGAGCTGGTCGACCTAGGCAATTAGTGTCATCTACGTAAATGCTAAGTACAATTAGCACTACGGTCAGAATAAATTAATGACCATACATAGTGTATCCACCTGGTGGCGTGTTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAATAAAAAAAA] [+] EMBL BI516623 [TCTCGCCCTTGCCGTTCGGCGGCACCACGCGCTAGGAAATTTATACCGCGACGGCGATATCATCATGGCTTCCTACCGCGGGAAGGAAACGAACGCGGTGGAAGGAAGGAAGGAGGGAGAGGAGTTGTGTCAGAGGAGGAGAGGGTGTAACACGGCGCACGGCAACAGGAACCCCGGACGAGCTGGTCGACCTAGGCAATTAGTGTCATCTACGTAAATGCTAAGTACAATTAGCACTACGGTCAGAATAAATTAATGACCATACATAGTGTATCCACCTGGTGGCGTGTTTCATGTGTGTATGTGTGTGTGTGTGTGTGTAATATATGAACAATATATATACATAGATATATATATACATATGCATATACATGTACACCTATCAAATTAACTATACATTATGTACCTATAGCATATAGTCGTTAAATGAGAAGAAGAAAAAAAAAACATTGACACGTCGCGTAATAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_121#0 TAACGATGGTTTAATTAATGTTTTTATTTAGATCACTATTTATATATCAAAGAATTATAT 60 consensus_121#2 ------------------------------------------------------------ consensus_121#1 ------------------------------------------------------------ consensus_121#0 TTTCCTTCCCACTTTCTCTTTATTACAATAAAATCATTTGTTTTATTATGTTAATTTTGC 120 consensus_121#2 ------------------------------------------------------------ consensus_121#1 -------------------------------------------------------GTAGG 5 consensus_121#0 TAAAATAAATTAAACGAATGCGCAAACCGAGGACATTGAACAATAATCCTTGGATTCCTA 180 consensus_121#2 -----------TCTCGCCCTTGCCGTTCGGCGGCACCACGCGCTA------GGAAATTTA 43 consensus_121#1 TATATTATACATTAAAGACTCGATACTTAACA--CTTGATGAACACTTTAATGATACATG 63 * * ** * consensus_121#0 AGCGCACGTGAAGCAGCTGCCTTCCTATTTAGCGAGCATAGTAGTAGACTGTCTCAC--- 237 consensus_121#2 TAC---CGCGACGGCGATATCATCATGGCTTCCTACCGCGGGAAGGAAACG--------- 91 consensus_121#1 TACACACGTACACACACGTATATAATATATATATAATATAATACGTACATATATTACAGA 123 * ** * * * * * consensus_121#0 GCAACTCCGGTGGAAGAACGAGCCA-ACGAGAAAAGTATATACACAGGCACACACATTCG 296 consensus_121#2 --AACGCGGTGGAAGGAAGGAAGGA-GGGAGAGGAGTTGTGTCAGAGGAGGAGAGG---G 145 consensus_121#1 GAAACGCAATATAAATACGAATACATACACGACAAAAGATTACATAATAACACATACACA 183 *** * * * * * ** * ** * * * consensus_121#0 CGCATCGCTGAGTGTTAAAAATATTATTTTAGATATATTAA--AATGATAGCAATTAACC 354 consensus_121#2 TGTAACACGGCGCACGGCAACAGGAACCCCGGACGAGCTGGTCGACCTAGGCAATTAGTG 205 consensus_121#1 CACACACATACGTACAGAAACACGC-CACCAGGTGGATACACTATGTATGGTCATTAATT 242 * * ** * * **** consensus_121#0 ATATGTCTATG-AGAGATACAACAAAAGCATAGCATCGATGCGTTAATAATAATATAAAT 413 consensus_121#2 TCATCTACGTA-AATGCTA-AGTACAAT--TAGCAC---TACGGTCAGAATAA-ATTAAT 257 consensus_121#1 TATTCTGACCGTAGTGCTA-ATTGTACT--TAGCATT--TACGTAGATGACAC--TAATT 295 * * * * ** * * ***** * ** * * * * * * consensus_121#0 ATCTATATATA-TATATATATATAAATATATATGTTCATGTGTGTATGTGTGTGTGTGTG 472 consensus_121#2 GACCATACATAGTGTATCCACCTGGTGGCGTGT-TTCATGTGTGTATGTGTGTGTGTGTG 316 consensus_121#1 GCCTAGGTCGACCAGCTCGTCCGGGGTTCCTGTTGCCGTGCGC-CGTGTTACACCCTCTC 354 * * * * * * * ** * *** * * consensus_121#0 TGTGTAATATATGAACAATATATATACATAGATATAT-ATATACATATGCATAT----AC 527 consensus_121#2 TGTGTAATATATGAACAATATATATACATAGATATAT-ATATACATATGCATAT----AC 371 consensus_121#1 CTCCTCTGACACAACTCCTCTCCCTCCTTCCATCCACCGCGTTCGTTTCCTTCCCGCGGC 414 * * * * * * * * * ** * * * * * * * * consensus_121#0 ATGTACACCT--ATCAAATTAACTATACATTATGTA---CCTATAGCATATAGTCGTTAA 582 consensus_121#2 ATGTACACCT--ATCAAATTAACTATACATTATGTA---CCTATAGCATATAGTCGTTAA 426 consensus_121#1 GAGGAAGCCATGATGATATCGCCGTCGCGGTATAAATTTCCTAGCGCGTGGTGCCGCCGA 474 * * ** ** * ** * * *** * **** ** * * ** * consensus_121#0 ATGAGAAGAAGAAAAAAA--AAACATTGACACGTCGCGTAATAAAAAAAAAAAAAAATTT 640 consensus_121#2 ATGAGAAGAAGAAAAAAA--AAACATTGACACGTCGCGTAATAAAAAAAA---------- 474 consensus_121#1 ACGGCAAGGGCGAGAACCCTGGTCGATCAAATTTCGCCTAATAATGAAAACGACAAAAGG 534 * * *** * ** * * * * **** ****** **** consensus_121#0 GACTTGATACGGATTCACAGATGTTGATGAAGAAAACATGTTGTTGTCTCTAGA 694 consensus_121#2 ------------------------------------------------------ consensus_121#1 AAAAAAA----------------------------------------------- 541 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |