These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1009 fasta sequence [AATTCAGTGCTCCTATTTCATGTATTTCCAGTTTCTTCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATATGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTGATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTTAGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTTTGCAAACTTACAGGTTCGACATCAATTGTAGGTTTCCCAAAATGTTTCCGATCAATGTCGGCTACTACAATATCAGCACATTTCTGTGCTTCTATTACTACTCTTTTAATGTATTCTTCTCCGGAAGTTGGAGGCAAAGACAGGTTAAGATCCTCATCAATTTCTCCAACAACGAAAGCAGGTTTTGCTAAATAATCTGTCATTTTTCTTAGTATTTTTAAATAATTATTAAATATTATTTATTTCAATCTATAAATAGGTTATATTATTTCTTTCAGATGAAGTTATTTATGGTCACCCCCTCTATGTAAATTTAGTACAAAGTTTTTCTTTTCATATTCCTATGATGCAAAGTATTAATTACGAAAAAAATATTCAAAAAAGATATATTGAATTTATGCATCTGAATAAAATAAATAATAAAGTAA] [-] EMBL BI506926 [AATTCAGTGCTCCTATTTCATGTATTTCCAGTTTCTTCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATATGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTGATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTTAGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTT ] [+] EMBL BI506673 [ ATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTGATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTTAGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTTTGCAAACTTACAGGTTCGACATCAATTGTAGGTTTCCCAAAATGTTTCCGATCAATGTCGGCTACTACAATATCAGCACATTTCTGTGCTTCTATTACTACTCTTTTAATGTATTCTTCTCCGGAAGTTGGAGGCAAAGACAGGTTAAGATCCTCATCAATTTCTCCAACAACGAAAGCAGGTTTTGCTAAATAATCTGTCATTTTTCTTAGTATTTTTAAATAATTATTAAATATTATTTATTTCAATCTATAAATAGGTTATATTATTTCTTTCAGATGAAGTTATTTATGGTCACCCCCTCTATGTAAATTTAGTACAAAGTTTTTCTTTTCATATTCCTATGATGCAAAGTATTAATTACGAAAAAAATATTCAAAAAAGATATATTGAATTTATGCATCTGAATAAAATAAATAATAAAGTAA] consensusID : consensus_1225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [TTTTTTTTTGGCTTTTCTAATATTCTTTATTACCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATCTGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTG] [+] EMBL BI511841 [TTTTTTTTTGGCTTTTCTAATATTCTTTATTACCGATTTTGCACGCATGATTGAACATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATCTGGAGTTAATGGCATTTGCAGAACAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAATGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGATATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCCAACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTAATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATACTTGATACAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1225#0 AATTCAGTGCTCCTATTTCATGTATTTCCAGTTTCTTCGATTTTGCACGCATGATTGAAC 60 consensus_1225#1 --TTTTTTTTTGGCTTTTCTAATATTCTTTATTAC--CGATTTTGCACGCATGATTGAAC 56 ** * * **** **** ** * *********************** consensus_1225#0 ATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATATGGAGTTAATGGCATTTGCAGAA 120 consensus_1225#1 ATGTTCTAGCCAAAGATCTTAAACAGGAACATGTATCTGGAGTTAATGGCATTTGCAGAA 116 ************************************ *********************** consensus_1225#0 CAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAA 180 consensus_1225#1 CAACTAGCAATGCATATATCCATTGACCCAATTCATATTCTATCTTTTCCAGTGTTTCAA 176 ************************************************************ consensus_1225#0 TGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGA 240 consensus_1225#1 TGTGTTCCACTAAATATTCTAATATTTGTTCTACTTCTGGATGATTTAAACAAAAAATGA 236 ************************************************************ consensus_1225#0 TATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCC 300 consensus_1225#1 TATCCAATGTTGGAGCAATTCTTGTTTTTTCCTTATCATTACTTGAACAAAATTTGATCC 296 ************************************************************ consensus_1225#0 AACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTA 360 consensus_1225#1 AACCTTTTTCATCATCAATACTTGGCATATCAATCTTTGGACGTTTCCATTTACGTTTTA 356 ************************************************************ consensus_1225#0 ATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATA 420 consensus_1225#1 ATGATTGAATTTCGTTTTTCAATTGACTTATATATAATCTGATATTTGAAAAGTCTGATA 416 ************************************************************ consensus_1225#0 CTTGATACAACTGCCAATCAAGCGAAGGGCCAAGCCATGGTGGTGCCTCCATACAGCCTG 480 consensus_1225#1 CTTGATACAACTG----------------------------------------------- 429 ************* consensus_1225#0 ATAACTTATAACGTTGCGTTTACATAATTATTATATATGTTGTTTACATTCTAACAAGTT 540 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 AGAATTCTAATTTCTTGTATAAACGATTGTAAAACATCGTTTGCAAACTTACAGGTTCGA 600 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 CATCAATTGTAGGTTTCCCAAAATGTTTCCGATCAATGTCGGCTACTACAATATCAGCAC 660 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 ATTTCTGTGCTTCTATTACTACTCTTTTAATGTATTCTTCTCCGGAAGTTGGAGGCAAAG 720 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 ACAGGTTAAGATCCTCATCAATTTCTCCAACAACGAAAGCAGGTTTTGCTAAATAATCTG 780 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 TCATTTTTCTTAGTATTTTTAAATAATTATTAAATATTATTTATTTCAATCTATAAATAG 840 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 GTTATATTATTTCTTTCAGATGAAGTTATTTATGGTCACCCCCTCTATGTAAATTTAGTA 900 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 CAAAGTTTTTCTTTTCATATTCCTATGATGCAAAGTATTAATTACGAAAAAAATATTCAA 960 consensus_1225#1 ------------------------------------------------------------ consensus_1225#0 AAAAGATATATTGAATTTATGCATCTGAATAAAATAAATAATAAAGTAA 1009 consensus_1225#1 ------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |