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Apis mellifera
cluster # 1227 cluster # 1227       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1227#0 length = 844 sequences # 2  
consensus_1227#1 length = 518 sequences # 1  

consensusID : consensus_1227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 844
fasta sequence
                              [TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATCTGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGCAGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTTTGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGTGGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAACATA]

[+] EMBL BI506917             [TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATCTGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGCAGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTTTGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGTGGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGA                                                                                                                                                                                                                                                                   ]
[+] EMBL BI509446             [                                                                                                                                                                                                                                                                                                       AATATGGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATTAGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAACCTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAACATA]


>consensus_1227#0 TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATC TGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGC AGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTT TGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGT GGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATAT GGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGATT AGAACAGATGGGTTTTAGTGATGTTGATAGTGAAAATAAACCAGTTAGTTTTCAACAAAC CTGCGAAGCAAAAAGATCCATACATTTGCAAGAACTTCAACAAAAAGAAGATGAAATGCG ACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAGCGGAAAAAGA GCTTCATAATAAATTCGATAAACTAAAAAAAGATCATACAGAGGAAAAGAAAAAGCTGGA AGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGAAAAACTCAATT CGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAAAAAATAAAAACT GACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATATATGACTATTATTA TTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATTCAAACATGCCCAAA CATA



consensusID : consensus_1227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAATTAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATATTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCATGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTGTATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA]

[+] EMBL BI510310             [AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAATTAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATATTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCATGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTGTATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA]


>consensus_1227#1 AGATCAATTGGTGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGG TGAAACTGGTCTTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATC TACTCCAAGTTCGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACA AGAAAGCAATGTTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGATCAAAT TAACAAAGAAGATAGTTTTAAAGCTGTTGTTGATTACATAGATGCTCAATTTGAAGCATA TTTACAAGAAGAATTAAAGATAAAACGATCTTTGGCAACTTATCACGATAGTCGTATTCA TGTTTGCTTGTATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTGATCTAGTCTG TATGAAGAAACTTGACACAAAAGTTAATATTATACCAATTATTGCTAAAGCTGATACGAT ATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1227#0      TGCTAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTATATC 60
consensus_1227#1      ------------------------------------------------------------
                                                                                  

consensus_1227#0      TGAATTACAAAATAATGGTGTTCATATTTATCAATTTCCTACTGACGACGAAAGCGTCGC 120
consensus_1227#1      ------------------------------------------------------------
                                                                                  

consensus_1227#0      AGAAGTAAATACTAGTATGAATGCTCATGTACCTTTTGCAGTAGTTGGTAGCACAGATTT 180
consensus_1227#1      ------------------------------------------------------------
                                                                                  

consensus_1227#0      TGTTCGAGTCGGAAATAAAATGATGCGTTCTCGTCAATATCCATGGGGCACAGTACAAGT 240
consensus_1227#1      ------------------------------------------------------------
                                                                                  

consensus_1227#0      GGAAAATGAATCCCATTGTGATTTCGTCAAGTTGCGCGAAATGTTGATAAGGACAAATAT 300
consensus_1227#1      -------------------------------------------------AGATCAATTGG 11
                                                                       **  *** *  

consensus_1227#0      GGAAGATATGAGAGAAAAAACGCATTGTCGTCATTATGAATTATATCGTAGAAAACGAT- 359
consensus_1227#1      TGAATAAATCAGTTCAGAATGGATTTGTCTTTAATATTCTCTGTATTGGTGAAACTGGTC 71
                       *** * ** **   * **  *  ***** * * ***    * *** *  ****  * * 

consensus_1227#0      TAGAACAGATGGGTTTTAGTGATGTTGA---TAGTGAAAAT----AAACCAGTTAGTTTT 412
consensus_1227#1      TTGGAAAGTCTACTCTTATGGATTCTCTCTTTAATACAAGTTTTGAATCTACTCCAAGTT 131
                      * * * **     * ***  ***  *     ** *  ** *    ** * * *     **

consensus_1227#0      CAACAAACCTGCGAAGCAAAAAGATCCATAC--ATTTGCAAGAACTTCAACAAAAAGAAG 470
consensus_1227#1      CGCATAATCTTCCTGCTGTAAAACTCAAAGCCCATACATATGAATTACAAGAAAGCAATG 191
                      *    ** ** *       ***  ** *  *  **    * *** * *** ***   * *

consensus_1227#0      ATGAAATGCGACAGATGTTCGTGGCCCGAGTAAAAGAAAAAGAAGCTGAATTAAAAGAAG 530
consensus_1227#1      TTAGATTGAAACTTACTATTGTTGATACAGTTGGATATGGAGA--TCAAATTAACAAA-- 247
                       *  * **  **  *   * ** *    ***   * *   ***     ****** * *  

consensus_1227#0      CGGAAAAAGAGCTTCATAATAAATTCGATAAACTAAAAAAAGATCA-TACAGAGGAAAAG 589
consensus_1227#1      ---GAAGATAGTTTTAAAGCTG--TTGTTGATTACATAGATGCTCAATTTGAAGCATATT 302
                          ** * ** ** * *      * * * *    * * * * *** *    ** * *  

consensus_1227#0      AAAAAGCTGGAAGAAAGTAGAAAGAAACTCGAGGATGATATTTTAGAATTCAATAGGCGA 649
consensus_1227#1      TACAAGAAGAATTAAAGATAAAACGATCTT-----TGGCAACTTATCA--CGATAGTCGT 355
                       * ***  * *  ****   ***  * **      **  *  ***  *  * **** ** 

consensus_1227#0      AAAACTCA-ATTCGCTCAACAACCTCAGCATCACACATTAACACTAGGTAAAAGCAAAAA 708
consensus_1227#1      ---ATTCATGTTTGCTTG--TATTTCATTTGTCCAACTGGACATGGTTTAAAATCAATTG 410
                         * ***  ** ***     *  ***      **  *  ***     ***** ***   

consensus_1227#0      AAAATAAAAACTGACATTAATATAAATAAATACGACATTTTGTATCTCTCTATATATA-- 766
consensus_1227#1      ---ATCTAGTCTG-TATGAAGA-AACTTGACACAAAAGTTAATATTATACCAATTATTGC 465
                         **  *  ***  ** ** * ** *  * ** * * **  ***    * *  ***   

consensus_1227#0      TATGACTATTATTATTTTAAACGCGTAACAATCAATTACTAAAATTGAAATTAAATTATT 826
consensus_1227#1      TAAAGCTGATACGATATCAAAAACAGAATTACAAAAGTTTAAGACAAAAATTA------- 518
                      **   **  **  ** * ***  *  **  *  **    *** *   ******       

consensus_1227#0      CAAACATGCCCAAACATA 844
consensus_1227#1      ------------------
                                        




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)