These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATTATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAAGTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT] [+] EMBL BI507371 [TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATTATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAAGTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT] consensusID : consensus_1307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAAGAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCATATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAAA] [+] EMBL BI508918 [GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAAGAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCATATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1307#0 TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATT 60 consensus_1307#1 ----------------------GCTCTTCTGCCTGGTGA-AGGTGCTGCTATGGCTG--C 35 ** * ** * * * ** * *** *** consensus_1307#0 ATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTT-TCTTCTAAATTCTGTTTTGTCACA 119 consensus_1307#1 ATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGA 95 ** *** ** * * * * ** * ** * * ** ** * * consensus_1307#0 AGTTGTAGCATAAACGAACATGAGCAATGG-ATGCACG-TAGAAGAGATAGA-GAACA-A 175 consensus_1307#1 GATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGA 155 *** ***** * * *** *** * *** *** ** ** *** * consensus_1307#0 ATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATT-- 233 consensus_1307#1 AGCTGTTCGTATCA-GAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGG 214 * * * * * * * **** * * ** * *** *** *** consensus_1307#0 CTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAA 293 consensus_1307#1 CTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGA--CAATTTAG 272 ** * ***** * * * * *** *** **** ** * * consensus_1307#0 GGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGA 353 consensus_1307#1 AGAGATGGTTAATCAAAAATTGGCACAAGAACAAA--AAAAGAAAATAACATGATTGTTT 330 ** * *** ** ** * * * ** *** **** ** * ** * * consensus_1307#0 AGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTG 413 consensus_1307#1 TATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATT 390 ***** ** * ** * * ** * * **** ** *** * * * consensus_1307#0 AATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGA 473 consensus_1307#1 ATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTA 450 * ** * * ** ** ** * * * ** ** * * * *** ** * consensus_1307#0 AAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCAC 533 consensus_1307#1 TCTACTTATTATTAGTTAATTATATATCATATAATACATTAA--TTATTATGAAAAATAA 508 * * * ** * * * * * * ** * * *** * consensus_1307#0 ATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTA 593 consensus_1307#1 ATTAAACAATTTTCATTTTATGAATAAAAAAAA--------------------------- 541 ** *** * * * * * *** consensus_1307#0 T 594 consensus_1307#1 - |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |