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Apis mellifera
cluster # 1307 cluster # 1307       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1307#0 length = 594 sequences # 1  
consensus_1307#1 length = 541 sequences # 1  

consensusID : consensus_1307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 594
fasta sequence
                              [TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATTATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAAGTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT]

[+] EMBL BI507371             [TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATTATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAAGTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT]


>consensus_1307#0 TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATT ATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTTTCTTCTAAATTCTGTTTTGTCACAA GTTGTAGCATAAACGAACATGAGCAATGGATGCACGTAGAAGAGATAGAGAACAAATTGG ATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATTCTGACGA AGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAAGGAAACA AGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGAAGGTAAA AAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTGAATTGGA GGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGAAAGGATC AAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCACATGTGAC ATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTAT



consensusID : consensus_1307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAAGAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCATATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAAA]

[+] EMBL BI508918             [GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAAGAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCATATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAAA]


>consensus_1307#1 GCTCTTCTGCCTGGTGAAGGTGCTGCTATGGCTGCATATGTTGCAGAAGGAAAACGTATA CCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGAGATTGCTGCATATGAAGCTGTTGGT TATGTTATGAGTGGTAGCAGACATCGACGAATGGAAGCTGTTCGTATCAGAAAAGAGAAC CAGATTTATTCTGCTGATGAGAAACGAGCATTGGCTATGTTTAGTAAAGAAGAACGACAA AAAAGAGAAAATCTTATTTTGGGACAATTTAGAGAGATGGTTAATCAAAAATTGGCACAA GAACAAAAAAAGAAAATAACATGATTGTTTTATGTAAAAATAATATATTTGATAATGTAT ATAAAATTCTTGAATGTATTATAAAATATTATTTATATGTATGTATATATATATATATAT ATATGTGTATACATACATTAAAATATATTATCTACTTATTATTAGTTAATTATATATCAT ATAATACATTAATTATTATGAAAAATAAATTAAACAATTTTCATTTTATGAATAAAAAAA A



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1307#0      TTATACGTAACTGTGTATATGAATATTTTTACCAATTAACAAATGTCGATATTGCTTATT 60
consensus_1307#1      ----------------------GCTCTTCTGCCTGGTGA-AGGTGCTGCTATGGCTG--C 35
                                                ** * **   * * *  **  * *** ***    

consensus_1307#0      ATCTGTAATTAAAACCAGAGGGCAATCTTGTAGTT-TCTTCTAAATTCTGTTTTGTCACA 119
consensus_1307#1      ATATGTTGCAGAAGGAAAACGTATACCTAGAAGAGGTGAAATTGGTTTAACTTCTGAAGA 95
                      ** ***     **   * * *   * ** * **   *    *   **    **    * *

consensus_1307#0      AGTTGTAGCATAAACGAACATGAGCAATGG-ATGCACG-TAGAAGAGATAGA-GAACA-A 175
consensus_1307#1      GATTGCTGCATATGAAGCTGTTGGTTATGTTATGAGTGGTAGCAGACATCGACGAATGGA 155
                        ***  *****        *  *  ***  ***   * *** *** ** ** ***   *

consensus_1307#0      ATTGGATTATGTGGTGTTGACAGAATTTGGGGAAAATCGCCAACACGAATCGAAGATT-- 233
consensus_1307#1      AGCTGTTCGTATCA-GAAAAGAGAACCAGATTTATTCTGCTGATGAGAAACGAGCATTGG 214
                      *   * *  * *   *   * ****   *    *    **  *   *** ***  ***  

consensus_1307#0      CTGACGAAGATGAAGAAATTAATCGATATAAAGACAATATTATGCCAAGAATTAGAAAAA 293
consensus_1307#1      CTATGTTTAGTAAAGAAGAACGACAAAAAAGAGAAAATCTTATTTTGGGA--CAATTTAG 272
                      **        * *****      * * * * *** *** ****     **   *    * 

consensus_1307#0      GGAAACAAGAAATGAAGAAGAAGAAAAGTAAAAAATTAAAAAAAGAAAAGAAAGCTAAGA 353
consensus_1307#1      AGAGATGGTTAATCAAAAATTGGCACAAGAACAAA--AAAAGAAAATAACATGATTGTTT 330
                       ** *     *** ** **   * * *  ** ***  **** ** * ** *    *    

consensus_1307#0      AGGTAAAAAAGAAAAAATATAAAAAGAAAAAGAAAAAATCAGATAGTAGTTCTGATAGTG 413
consensus_1307#1      TATGTAAAAATAATATATTTGATAATGTATATAAAATTCTTGAATGTATTATAAAATATT 390
                           ***** ** * ** * * **   * * ****     **  *** *    *   * 

consensus_1307#0      AATTGGAGGAATTGGAATGGGTAGAAAAAAATGGAATTAATGACAAAGCAAAGATTAAGA 473
consensus_1307#1      ATTTATATGTATGTATATATATATATATATATATGTGTATACATACATTAAAATATATTA 450
                      * **  * * **    **   ** * * * **     **   * * *  ***   **  *

consensus_1307#0      AAGGATCAAGTTCAGATGAAAGTGGTGATGAAGGCATAGTAGGCCCAGTTCAGAAACCAC 533
consensus_1307#1      TCTACTTATTATTAGTTAATTATATATCATATAATACATTAA--TTATTATGAAAAATAA 508
                           * *   * ** * *   *       *    * * **     * *    ***  * 

consensus_1307#0      ATGTGACATTATCTGCTAAAGATTTTGGCAAAGCTCTTCTGCCTGGTGAAGGTGCTGCTA 593
consensus_1307#1      ATTAAACAATTTTCATTTTATGAATAAAAAAAA--------------------------- 541
                      **   *** * *    *  *    *    ***                            

consensus_1307#0      T 594
consensus_1307#1      -
                       




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)