These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1334#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACGTTACATTCTTACTAATCGTGGCATTGCTCAAATGATTGAAAAATATCAATCCGGAGATTTTGGTTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGTGATGTTCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACACCAAAAAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCATATGCTTTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCTAGGTTATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA] [+] EMBL BI507141 [ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACGTTACATTCTTACTAATCGTGGCATTGCTCAAATGATTGAAAAATATCAATCCGGAGATTTTGGTTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGTGATGTTCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACACCAAAAAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCATATGCTTTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCTAGGTTATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA] consensusID : consensus_1334#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [ACGAAGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCTTTCGTTGGCGCCTTTCTAACCAATTGCCAGGCGTACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACGGAGATTCGAGAACTTTTTTGCGCACGTACCTTTACGTATTATATACGAATCCTGCGCTCTTTTATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTCCATTTTTTTATTCATAGGAAAATGAGCAGTTCTGAGGAGGTATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGCTTNNNTTTATTCTGTAGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGA] [+] EMBL BI515689 [ACGAAGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCTTTCGTTGGCGCCTTTCTAACCAATTGCCAGGCGTACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACGGAGATTCGAGAACTTTTTTGCGCACGTACCTTTACGTATTATATACGAATCCTGCGCTCTTTTATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTCCATTTTTTTATTCATAGGAAAATGAGCAGTTCTGAGGAGGTATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAAGATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTATAGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGCTTNNNTTTATTCTGTAGATGATGAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACAAGCAGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1334#0 ATCCTGGATTTCGTGGTTTTGCAATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGA 60 consensus_1334#1 --------------------------------------------------------ACGA 4 * ** consensus_1334#0 AG--ATTATATCCAGGATAAGTTTAATTTAACCGGACTAAATGAACAAGTACCACATTAT 118 consensus_1334#1 AGCAGCAATGACCACGGAAACCTCCCCATACCTAGCCT---TTCGTTGGCGCC--TTTCT 59 ** ** *** * ** * ** * * ** * * ** ** * consensus_1334#0 AGGCAAGCATTAGATATGATTCTTGATCTTGAACCTGATGATGAATTGGATGGCCATCCA 178 consensus_1334#1 AACCAATTGCCAGGCGT-ACACTAAGCACTGACGTCGCATATATGTGTGCATAATATACG 118 * *** ** * * ** *** * ** * * ** * consensus_1334#0 AACCAATCTGAA-TTAATTGAACAAGCAGCAGAACTACTTTATGGATTAATTCATGCACG 237 consensus_1334#1 GAGATTCGAGAACTTTTTTGCGCACGTACCTTTAC-GTATTATATACGAATCC-TGCGCT 176 * *** ** *** ** * * * ** **** * *** * *** * consensus_1334#0 TTACATTCTTACTAATCG-TGGCATTGCTCAAAT-GATTGAAAAATATCAATCCGGAGAT 295 consensus_1334#1 CTTTTATCGCGGTGATCACTTTTATTCTATATATCGATAGAAAAATATTTCTTC---CAT 233 * ** * *** * *** * ** *** ********* * * ** consensus_1334#0 TTTGGTTATTGTCCACGTGTATATTGTGAATCCCAACCTATGTTGCCTCTGGGTCTTAGT 355 consensus_1334#1 TT----TTTTATTCATAGGAAAATGAGCAGTTCTG----AGGAGGTATCCTGGATTTCGT 285 ** * ** * ** * * ** * * * * * * ** ** ** ** consensus_1334#0 GATGTTCCTGGAGAAGCAATGGTTAAAAGTTATTGTCCCAAATGTATGGATGTTTATACA 415 consensus_1334#1 GGTTTTGC---AATCTCAGGGGAAATGAATTTTTTTGTGAAGTTGATGAA-GATTATATC 341 * * ** * * ** ** * * ** ** * ** * *** * * ***** consensus_1334#0 CCAAAAAGCTCTAGACATCATCACACAGATGGAGCATATTTTGGAACAGGATTTCCCCAT 475 consensus_1334#1 CAGGATAAGTTTA-ATTTAACCGGACTAAATGAACAAGT-----ACCACATTATAGGCAA 395 * * * * ** * * * * ** * ** ** * * ** * * ** consensus_1334#0 ATGCTTTTTATGGTTCATCCAGAATATAGACCCAAACGTCCAACAAATCAGTTTGTACCT 535 consensus_1334#1 GCATTAGATATGATTCTT---GATCTTGAACCT--GCTTNNNTTTATTCTGTAGATGA-T 449 * **** *** * ** * *** * * * ** ** * * consensus_1334#0 AGGTTATATGGCTTTAAAATTCATCCTCTAGCATATCAGTTTCAACAACAATCTGCATCA 595 consensus_1334#1 GAATTGGATGGCCATCCAAACCAATCTGAATTAATTGAACA--AGCAGCAGA-------- 499 ** ***** * ** ** ** * * * * * ** ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |