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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[TATGATTTACCGGATTCAAAGGAAACAGTACGAGGTGATGATACCAGGGTATTATGTACTTCTATCTATTCTGATATATCACCTTTGACGAAAGGTGCTGTCGCATACTCTACTTTAGAAGGACGACCCTCGGCATACAATTTTGAATCTAATACAGCATTACAGGAATGGGTGCAAGCGACAGATTTAAGAATCACGTTAGATAAAATGAATACTTTTGGTGACGAAGTTTTTGGCGATGATCAGGTATTAAAATCCTACTACTATGCAATCGCTGACGTTGCTGTTGGAGCACGTTGTGCTTGCAATGGTCACGCTGGAGAATGTGTAAACAGTACTAGTGTAGATGGAAAAACTCGTAGAGTATGTAGATGTGAACATAATACTGCGGGTCCAGATTGCAACGAGTGTATGCCCTTTTTCAATGATGCACCTTGGGGACGTGCTACTACCAAAGATGCGCACGAATGTAAACCTTGTAATTGCAATGGTTATTCAGAAAGATGCTTTTTTGATAAAGAATTATATAAAGTCACTGGTCATGGTGGACATTGTATAATTCTT]
[+] EMBL BI509102 [TATGATTTACCGGATTCAAAGGAAACAGTACGAGGTGATGATACCAGGGTATTATGTACTTCTATCTATTCTGATATATCACCTTTGACGAAAGGTGCTGTCGCATACTCTACTTTAGAAGGACGACCCTCGGCATACAATTTTGAATCTAATACAGCATTACAGGAATGGGTGCAAGCGACAGATTTAAGAATCACGTTAGATAAAATGAATACTTTTGGTGACGAAGTTTTTGGCGATGATCAGGTATTAAAATCCTACTACTATGCAATCGCTGACGTTGCTGTTGGAGCACGTTGTGCTTGCAATGGTCACGCTGGAGAATGTGTAAACAGTACTAGTGTAGATGGAAAAACTCGTAGAGTATGTAGATGTGAACATAATACTGCGGGTCCAGATTGCAACGAGTGTATGCCCTTTTTCAATGATGCACCTTGGGGACGTGCTACTACCAAAGATGCGCACGAATGTAAACCTTGTAATTGCAATGGTTATTCAGAAAGATGCTTTTTTGATAAAGAATTATATAAAGTCACTGGTCATGGTGGACATTGTATAATTCTT]
consensusID : consensus_1365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[TTTTTATCAATTTATTTTTCATTTTTTTTTATTTTATCAATAACANNNTTTTTTTATAAAAATTATTATTAAATATAGAAAACAAATTACAAATAACGTGTTAAAAATGAAATAAAAATAGTAATATGAAATTAAAGTAACAAAATTATTTAATGTAATAAAAAAAATTTATAATGATATAATATTATTTTTATTTTAAAAGGAATGGGTGCAAGCGACAGATTTAAGAATCACGTTAGATAAAATGAATACTTTTGGTGACGAAGTTTTTGGCGATGATCAGGTATTAAAATCCTACTACTATGCAATCGCTGACGTTGCTGTTGGAGCACGTTGTGCTTGCAATGGTCACGCTGGAGAATGTGTAAACAGTACTAGTGTAGATGGAAAAACTCGTAGAGTATGTAGGTAAGGTAATTTATAAATAATTATTTTTCTATATACAATAACTAGTTAAAATGATTAAATATTAGTAATATAGAGAATATAAGATATGTAACTAAAATGAAATATATAA]
[+] EMBL BI506829 [TTTTTATCAATTTATTTTTCATTTTTTTTTATTTTATCAATAACANNNTTTTTTTATAAAAATTATTATTAAATATAGAAAACAAATTACAAATAACGTGTTAAAAATGAAATAAAAATAGTAATATGAAATTAAAGTAACAAAATTATTTAATGTAATAAAAAAAATTTATAATGATATAATATTATTTTTATTTTAAAAGGAATGGGTGCAAGCGACAGATTTAAGAATCACGTTAGATAAAATGAATACTTTTGGTGACGAAGTTTTTGGCGATGATCAGGTATTAAAATCCTACTACTATGCAATCGCTGACGTTGCTGTTGGAGCACGTTGTGCTTGCAATGGTCACGCTGGAGAATGTGTAAACAGTACTAGTGTAGATGGAAAAACTCGTAGAGTATGTAGGTAAGGTAATTTATAAATAATTATTTTTCTATATACAATAACTAGTTAAAATGATTAAATATTAGTAATATAGAGAATATAAGATATGTAACTAAAATGAAATATATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1365#0 --------------------------------------TATGATTTACCGGATTCAAAGG 22
consensus_1365#1 TTTTTATCAATTTATTTTTCATTTTTTTTTATTTTATCAATAACANNNTTTTTTTATAAA 60
** * ** * *
consensus_1365#0 AAACAGTACGAGGTGATGATACCAGGGTA----TTATGTACTTCTATCTATTCTGATATA 78
consensus_1365#1 AATTATTATTAAATATAGAAAACAAATTACAAATAACGTGTTAAAAATGAAATAAAAATA 120
** * ** * * ** * ** ** * * ** * * * * ***
consensus_1365#0 TCACCTTTGACGAAAGGTGCTGTCGCATACTCTACTTTAGAAGGACGACCCTCGGC-ATA 137
consensus_1365#1 GTAATATGAAATTAAAGTAACAAAAT-TATTTAATGTAATAAAAAAAATTTATAATGATA 179
* * * ** ** ** * * * * ** * * ***
consensus_1365#0 CAATTTTGAATCTAATACAGCATTACAGGAATGGGTGCAAGCGACAGATTTAAGAATCAC 197
consensus_1365#1 TAATATTATTTTTATTTTA-----AAAGGAATGGGTGCAAGCGACAGATTTAAGAATCAC 234
*** ** * ** * * * **********************************
consensus_1365#0 GTTAGATAAAATGAATACTTTTGGTGACGAAGTTTTTGGCGATGATCAGGTATTAAAATC 257
consensus_1365#1 GTTAGATAAAATGAATACTTTTGGTGACGAAGTTTTTGGCGATGATCAGGTATTAAAATC 294
************************************************************
consensus_1365#0 CTACTACTATGCAATCGCTGACGTTGCTGTTGGAGCACGTTGTGCTTGCAATGGTCACGC 317
consensus_1365#1 CTACTACTATGCAATCGCTGACGTTGCTGTTGGAGCACGTTGTGCTTGCAATGGTCACGC 354
************************************************************
consensus_1365#0 TGGAGAATGTGTAAACAGTACTAGTGTAGATGGAAAAACTCGTAGAGTATGTAGATGTGA 377
consensus_1365#1 TGGAGAATGTGTAAACAGTACTAGTGTAGATGGAAAAACTCGTAGAGTATGTAGGT---A 411
****************************************************** * *
consensus_1365#0 ACATAATACTGCGGGTCCAGATTGCAACGAGTGTATGCCCTTTTTCAATGATGCACCTTG 437
consensus_1365#1 AGGTAAT-TTATA------------AATAATTATTTTTCTATATACAATAACTAG---TT 455
* **** * ** * * * * * * * **** * *
consensus_1365#0 GGGACGTGCTACTACCAAAGATGCGCACGAATGTAAACCTTGTAATTGCAATGGTTATTC 497
consensus_1365#1 AAAATGATTAAATATTAGTAATATAGA-GAATATAAGATATGTAACTAAAATGAA-ATAT 513
* * * ** * ** * **** *** ***** * **** **
consensus_1365#0 AGAAAGATGCTTTTTTGATAAAGAATTATATAAAGTCACTGGTCATGGTGGACATTGTAT 557
consensus_1365#1 ATAA-------------------------------------------------------- 517
* **
consensus_1365#0 AATTCTT 564
consensus_1365#1 -------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |