These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [TAATTATATTTTGGGCATATATTATTTTAAAAAGGAAGTCATGTTGCACATATCAGAATTTACATCGAAAATTAATTTTCTTATTCAATTTTAATCAAATATATAAATGAACATAAAAATGATTTGGCACAGATCGTGATGCCGTTGAAAATTCAATACCAACTATATCTAGTTTCCACGAAACTAAATTGTGTCCTTATGTTTCTTGTCACAGAGAAAAAAGGCCAGAAAGAATTCAAAGTATGGAAAATGTAGGATAATTGAATATCTCGTGTTATTAATACACACGTTATACATNNNGTATNNNCGTATTTATACATTAGCAGGTGCGCGCGCGCACACATCCACCCACCCATCCACTTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAATCAAATCAAAGGTCGGAAGCTTTCTCAAATTAGCGGAAAGATATTTGTTGTGATAATAAATATTGAATATATAGCTGTTTTAGGGTATGAATCATTCCTATAAAAAATTAGAATTTAAATAATGCGTCGAGTTAGCGTGGAAAACTAACATTTTCAACAGTCTCAATTTTTTTCTATTCGAGNAAAGGTTCTCGTGAATGCGGATCGAAATGCTAAACGAACCTATCCC] [+] EMBL BI506768 [TAATTATATTTTGGGCATATATTATTTTAAAAAGGAAGTCATGTTGCACATATCAGAATTTACATCGAAAATTAATTTTCTTATTCAATTTTAATCAAATATATAAATGAACATAAAAATGATTTGGCACAGATCGTGATGCCGTTGAAAATTCAATACCAACTATATCTAGTTTCCACGAAACTAAATTGTGTCCTTATGTTTCTTGTCACAGAGAAAAAAGGCCAGAAAGAATTCAAAGTATGGAAAATGTAGGATAATTGAATATCTCGTGTTATTAATACACACGTTATACATNNNGTATNNNCGTATTTATACATTAGCAGGTGCGCGCGCGCACACATCCACCCACCCATCCACTTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAATCAAATCAAAGGTCGGAAGCTTTCTCAAATTAGCGGAAAGATATTTGTTGTGATAATAAATATTGAATATATAGCTGTTTTAGGGTATGAATCATTCCTATAAAAAATTAGAATTTAAATAATGCGTCGAGTTAGCGTGGAAAACTAACATTTTCAACAGTCTCAATTTTTTTCTATTCGAGNAAAGGTTCTCGTGAATGCGGATCGAAATGCTAAACGAACCTATCCC] consensusID : consensus_1375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [CAGAAAATCGTTGTTAAAAAATGTGAATAAACATATTGTTTCTTTTATTTTACGATTTATTTTGAAGCCGGGACGATCTTAGAAGCAAAATAGGATTAATTTCTGAAAAATTATCATTTTATTTTTATCAGAATTGTAATTCTTGAATTGCGCTCTTGTACTATCATTTATGTAACACCCTGTACATGTTGAATTGTTCTTTTAACAAGCATATTTAAATACGTGTACGTGTATGTTAACGGTACGAGCGTGTATCCTCGACAAAAAAAGGAAAAATGATTCTCGTTCAATCGACACGCGCACAAAGACGCGGATAGAAGTAGAAAATGGGATAGGTTCGTTTAGCATTTCGATCCGCATTCACGAGAACCTTTTCTCGAATAGA] [+] EMBL BI510205 [CAGAAAATCGTTGTTAAAAAATGTGAATAAACATATTGTTTCTTTTATTTTACGATTTATTTTGAAGCCGGGACGATCTTAGAAGCAAAATAGGATTAATTTCTGAAAAATTATCATTTTATTTTTATCAGAATTGTAATTCTTGAATTGCGCTCTTGTACTATCATTTATGTAACACCCTGTACATGTTGAATTGTTCTTTTAACAAGCATATTTAAATACGTGTACGTGTATGTTAACGGTACGAGCGTGTATCCTCGACAAAAAAAGGAAAAATGATTCTCGTTCAATCGACACGCGCACAAAGACGCGGATAGAAGTAGAAAATGGGATAGGTTCGTTTAGCATTTCGATCCGCATTCACGAGAACCTTTTCTCGAATAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1375#0 TAATTATATTTTGGGCATATATTATTTTAAAAAGGAAGTCATGTTGCACATATCAGAATT 60 consensus_1375#1 ------------------------------------------------------------ consensus_1375#0 TACATCGAAAATTAATTTTCTTATTCAATTTTAATCAAATATATAAATGAACATAAAAAT 120 consensus_1375#1 ------------------------------------------------------------ consensus_1375#0 GATTTGGCACAGATCGTGATGCCGTTGAAAATTCAATACCAACTATATCTAGTTTCCACG 180 consensus_1375#1 ---------CAGAAAAT--CGTTGTTAAAAAATGTGAATAAAC---ATATTGTTTCTTTT 46 **** * * *** **** * * *** ** * ***** consensus_1375#0 AAACTAAATTGTGTCCTTATGTTTCTTGTCACAGAGAAAAAAGGCCAGAAAGAATTCAAA 240 consensus_1375#1 ATTTTACGATTTATTTTGAAGC----CGGGAC-GATCTTAGAAGCAAAATAGGATT-AAT 100 * ** * * * * * * * ** ** * * ** * * ** *** ** consensus_1375#0 GTATGGAAAATGTAGGATAATTGAATATCTCGTGTTATTAATACACACGTTATACATNNN 300 consensus_1375#1 TTCTGAAAAAT-TATCATT-TTATTTTTATCAGAATTGTAATTCTTGAATTGCGC-TCTT 157 * ** ***** ** ** ** * * ** * **** * ** * * consensus_1375#0 GTATNNNCGTATTTATACATTAGCAGGTGCGCGCGCGCACACATCCACCCACCCATCCAC 360 consensus_1375#1 GTACTATC--ATTTATGTAACACCCTGTACATGT-TGAATTGTTCTTTTAACAAGCATAT 214 *** * ****** * * * ** * * * * ** ** * consensus_1375#0 TTACACACACACACACACACACACACACACACACACACACACACACACACACACAAAATC 420 consensus_1375#1 TTAAATACGTGTACGTGTATGTTAACG-GTACGAGCGTGTATCCTCG-ACAAAAAAAGGA 272 *** * ** ** * ** ** * * * * *** * *** consensus_1375#0 AAATCAAAGGTCGGAAGCTTTCTCAA-ATTAGCGGAAAGATATTTGTTGTGATAATAAAT 479 consensus_1375#1 AAAATGATTCTCG----TTCAATCGACACGCGCACAAAGACGCGGATAGAAGTAGAAAAT 328 *** * *** * ** * * ** ***** * * ** **** consensus_1375#0 ATTGAATATATAGCTGTTTTAGGGTATGAATCATTCCTATAAAAAATTAGAATTTAAATA 539 consensus_1375#1 G--GGATA---GGTTCGTTTAGCATTTCGATCCGCATTCACGAGAACCTTTTCTCGAATA 383 * *** * * ***** * * *** * * ** * **** consensus_1375#0 ATGCGTCGAGTTAGCGTGGAAAACTAACATTTTCAACAGTCTCAATTTTTTTCTATTCGA 599 consensus_1375#1 GA---------------------------------------------------------- 385 consensus_1375#0 GNAAAGGTTCTCGTGAATGCGGATCGAAATGCTAAACGAACCTATCCC 647 consensus_1375#1 ------------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |