Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1393 cluster # 1393       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1393#0 length = 555 sequences # 1  
consensus_1393#1 length = 441 sequences # 1  

consensusID : consensus_1393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [AATCAGCTCAAATTAGTTTAAATACAAATAGCCTAAAACACATCTTTGTTTACATACTTGATATTATTATTATTACTATTATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGTTCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAAAAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGAGTAATCGACTGAAATGCGGAAAAACGATGAAATCAACGTGGATTAATTAAGAAATAAAAAATAAAAAAAAAAAAAAAGAAACGAAAACGCGGGTGTGCTTTTGAGCGATGAGAAACCATGTACACATATACACAACACGCACACTTACAAATAAGAAAAAAAATACACAAAACACACAGGATACATACAAGTACACGCGTACAAACACGTACACATACCGTATGCTTNNNGTTTAGTAGCGATTTATAAACGATAAGTGATAGAGTAATTTAAATTGATCATTGCTATCGATGACTATTATCGAC]

[+] EMBL BI506667             [AATCAGCTCAAATTAGTTTAAATACAAATAGCCTAAAACACATCTTTGTTTACATACTTGATATTATTATTATTACTATTATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGTTCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAAAAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGAGTAATCGACTGAAATGCGGAAAAACGATGAAATCAACGTGGATTAATTAAGAAATAAAAAATAAAAAAAAAAAAAAAGAAACGAAAACGCGGGTGTGCTTTTGAGCGATGAGAAACCATGTACACATATACACAACACGCACACTTACAAATAAGAAAAAAAATACACAAAACACACAGGATACATACAAGTACACGCGTACAAACACGTACACATACCGTATGCTTNNNGTTTAGTAGCGATTTATAAACGATAAGTGATAGAGTAATTTAAATTGATCATTGCTATCGATGACTATTATCGAC]


>consensus_1393#0 AATCAGCTCAAATTAGTTTAAATACAAATAGCCTAAAACACATCTTTGTTTACATACTTG ATATTATTATTATTACTATTATTATTAATATTATTATTATTATTATATTATATTATATTA TTTTTATTGTTCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGG CGACAACAAAAAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATT TCGATTTCGAGTAATCGACTGAAATGCGGAAAAACGATGAAATCAACGTGGATTAATTAA GAAATAAAAAATAAAAAAAAAAAAAAAGAAACGAAAACGCGGGTGTGCTTTTGAGCGATG AGAAACCATGTACACATATACACAACACGCACACTTACAAATAAGAAAAAAAATACACAA AACACACAGGATACATACAAGTACACGCGTACAAACACGTACACATACCGTATGCTTNNN GTTTAGTAGCGATTTATAAACGATAAGTGATAGAGTAATTTAAATTGATCATTGCTATCG ATGACTATTATCGAC



consensusID : consensus_1393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence
                              [TCAAGTTTCGTATCAACGATGTTGCGAATAATTCGCGGATTCGAAATATTATTTTCATTCTTCGTGTACATGATCGTCTCGATAATTACTGTTAGACCGTTAAATTCGTACTATCGGGCATTGATTAATTAGGATCATCACACCGTGGCTCGCCACAACGTGCGTCTGTGACGGTTGATAGTAGCATCAAAATGATCATTCAAGTAGTCGCACTCTCTATCATAAGTTATTAATTATCATTATCGTTATCATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGTTCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAAAAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGAGTAATCGACTGAAATGCGGAA]

[-] EMBL BI511505             [TCAAGTTTCGTATCAACGATGTTGCGAATAATTCGCGGATTCGAAATATTATTTTCATTCTTCGTGTACATGATCGTCTCGATAATTACTGTTAGACCGTTAAATTCGTACTATCGGGCATTGATTAATTAGGATCATCACACCGTGGCTCGCCACAACGTGCGTCTGTGACGGTTGATAGTAGCATCAAAATGATCATTCAAGTAGTCGCACTCTCTATCATAAGTTATTAATTATCATTATCGTTATCATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGTTCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAAAAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGAGTAATCGACTGAAATGCGGAA]


>consensus_1393#1 TCAAGTTTCGTATCAACGATGTTGCGAATAATTCGCGGATTCGAAATATTATTTTCATTC TTCGTGTACATGATCGTCTCGATAATTACTGTTAGACCGTTAAATTCGTACTATCGGGCA TTGATTAATTAGGATCATCACACCGTGGCTCGCCACAACGTGCGTCTGTGACGGTTGATA GTAGCATCAAAATGATCATTCAAGTAGTCGCACTCTCTATCATAAGTTATTAATTATCAT TATCGTTATCATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGT TCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAA AAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGA GTAATCGACTGAAATGCGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1393#0      ------------------------------------------------------------
consensus_1393#1      TCAAGTTTCGTATCAACGATGTTGCGAATAATTCGCGGATTCGAAATATTATTTTCATTC 60
                                                                                  

consensus_1393#0      ------------------------------------------------------------
consensus_1393#1      TTCGTGTACATGATCGTCTCGATAATTACTGTTAGACCGTTAAATTCGTACTATCGGGCA 120
                                                                                  

consensus_1393#0      ------------------------------------------------AATCAGCTCAAA 12
consensus_1393#1      TTGATTAATTAGGATCATCACACCGTGGCTCGCCACAACGTGCGTCTGTGACGGTTGATA 180
                                                                         * * * * *

consensus_1393#0      TTAGTTTAAATACAAATAGCCTAAAACACATCTTTGTTTACATACTTGAT--ATTATTAT 70
consensus_1393#1      GTAGCATCAAAATGATCATTCAAGTAGTCGCACTCTCTATCATAAGTTATTAATTATCAT 240
                       ***  * ** *  *  *  * *  *  *    *   *  ****  * **  ***** **

consensus_1393#0      TATTACTATTATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGT 130
consensus_1393#1      TATCGTTATCATTATTAATATTATTATTATTATTATATTATATTATATTATTTTTATTGT 300
                      ***   *** **************************************************

consensus_1393#0      TCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAA 190
consensus_1393#1      TCTTTTTTTTTTACTCCATGTTTTTTAGTTCTCGTTATTACGTTTAAAGGCGACAACAAA 360
                      ************************************************************

consensus_1393#0      AAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGA 250
consensus_1393#1      AAGAGAAGTGTGACAAATGATAAAATGCCAAGCATCGATCGGTGTGTATTTCGATTTCGA 420
                      ************************************************************

consensus_1393#0      GTAATCGACTGAAATGCGGAAAAACGATGAAATCAACGTGGATTAATTAAGAAATAAAAA 310
consensus_1393#1      GTAATCGACTGAAATGCGGAA--------------------------------------- 441
                      *********************                                       

consensus_1393#0      ATAAAAAAAAAAAAAAAGAAACGAAAACGCGGGTGTGCTTTTGAGCGATGAGAAACCATG 370
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      TACACATATACACAACACGCACACTTACAAATAAGAAAAAAAATACACAAAACACACAGG 430
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      ATACATACAAGTACACGCGTACAAACACGTACACATACCGTATGCTTNNNGTTTAGTAGC 490
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      GATTTATAAACGATAAGTGATAGAGTAATTTAAATTGATCATTGCTATCGATGACTATTA 550
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      TCGAC 555
consensus_1393#1      -----
                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)