These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGCAATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAATGTAAATTAATATTTCTAATCCCTATCCTCAACATA] [+] EMBL BI506581 [TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGCAATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAATGTAAATTAATATTTCTAATCCCTATCCTCAACATA] consensusID : consensus_1404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [AAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAAAAAAAAAAAAAA] [+] EMBL BI509670 [AAATGCGACATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCCAAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCGTTGCAAAAAACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTGCCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAATATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATAACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAAATTGATCATAGTTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1404#0 TCAATCGCACGGCTGACTAAGCATCAATATGGTTAAATATACAGAACTTGGAAATGCGAC 60 consensus_1404#1 ---------------------------------------------------AAATGCGAC 9 ********* consensus_1404#0 ATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCC 120 consensus_1404#1 ATCAATAACTCCCTCCATCGAATTGAAACCAAACACAGCACCATATGATCCAAGATTTCC 69 ************************************************************ consensus_1404#0 AAATCAAAACCAGACAAGATATTNNNATACTAGTTTTTTGGATTTTCATCGTTGCAAAAA 180 consensus_1404#1 AAATCAAAACCAGACAAGATATTGTTATACTAGTTTTTTGGATTTTCATCGTTGCAAAAA 129 *********************** ********************************** consensus_1404#0 ACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTG 240 consensus_1404#1 ACGACATAGTGAAGATTATGAAGCATGTCAATATTTCAAAAAAGTATATAATGCAATGTG 189 ************************************************************ consensus_1404#0 CCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAA 300 consensus_1404#1 CCCAAATGCTTGGATAGAAAAATGGAATGAACAGATTGAAAACGGAGTGTTTCCAGGAAA 249 ************************************************************ consensus_1404#0 TATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATA 360 consensus_1404#1 TATATAATACAAGAGGCATCAAATTATAACTGCCTCTATAGTGATATTGTTTACATAATA 309 ************************************************************ consensus_1404#0 ACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAA 420 consensus_1404#1 ACAGGATTTTACAATTTTAAAGTATCAAATAATTCCTGTTTGTAAAATAATATTTAATAA 369 ************************************************************ consensus_1404#0 ATTGATCATAGTTTAATTCTTATTTAGTTTTATTAATTAATATTTTTTTTATTTTACTGC 480 consensus_1404#1 ATTGATCATAGTTTAAAAAAAAAAAAAA-------------------------------- 397 **************** * * consensus_1404#0 AATTNNTAAATACAAATAGAAATTTAAATATTATATTTTATTATTAAATTTTGTAAAAAT 540 consensus_1404#1 ------------------------------------------------------------ consensus_1404#0 GTAAATTAATATTTCTAATCCCTATCCTCAACATA 575 consensus_1404#1 ----------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |