These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGGAAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTCTCGTAATCATAATTCAGATGATACAATTGAACAAGATCCAGTTGCTATGGGCGATTTGGTAATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTATACGTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAGTAAATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGTTCAGATTTCCTAACGATTCGATCACATATGATATCGATGCTCAATATCTGTGGGGCAATTCTTTGATGATAATCCCAGTTTTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTGCCACGTGGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATATTACACATTGAATGCACCACTCGATGTCAT] [+] EMBL BI506537 [TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGGAAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTCTCGTAATCATAATTCAGATGATACAATTGAACAAGATCCAGTTGCTATGGGCGATTTGGTAATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTATACGTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAGTAAATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGTTCAGATTTCCTAACGATTCGATCACATATGATATCGATGCTCAATATCTGTGGGGCAATTCTTTGATGATAATCCCAGTTTTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTGCCACGTGGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATATTACACATTGAATGCACCACTCGATGTCAT] consensusID : consensus_1413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [CGGCAAATATTACACATTGAATGCACCACTCGATGTCATACCATTAATGATTCGCGGAGGATCTATTTTGCCAGCACAAAAACCAGCCGATACTACAACAGCTAGCAGAAAAAATAATTTTGAATTATTGATTACATTGGATAATGTAAAAAAGGCAAAAGGAGAATTATATTGGGATGATGGTGATAGTTTAGATTCGTTCGAGAAGAGACAATTTGTATGGACATTTTTCAATATTGAGAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGAGAAGATTATTTTAGATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTTTTTTTAAACGATCACGAAATACGATTCGAATATATCAAGAAGGAAAATTGCTTAAATATAAATAATTTACGAGTGGATTTGAGAGAAAATTTTTCGCTTTCTTGGAGATATGATGA] [+] EMBL BI511107 [CGGCAAATATTACACATTGAATGCACCACTCGATGTCATACCATTAATGATTCGCGGAGGATCTATTTTGCCAGCACAAAAACCAGCCGATACTACAACAGCTAGCAGAAAAAATAATTTTGAATTATTGATTACATTGGATAATGTAAAAAAGGCAAAAGGAGAATTATATTGGGATGATGGTGATAGTTTAGATTCGTTCGAGAAGAGACAATTTGTATGGACATTTTTCAATATTGAGAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGAGAAGATTATTTTAGATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTTTTTTTAAACGATCACGAAATACGATTCGAATATATCAAGAAGGAAAATTGCTTAAATATAAATAATTTACGAGTGGATTTGAGAGAAAATTTTTCGCTTTCTTGGAGATATGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1413#0 TTTGTTGATGAACTTTTATCAAATACCAATGGTTGGTGCTGACATTTGTGGATTCAATGG 60 consensus_1413#1 ---------------------------------------CGGCAAATATT-ACACATTGA 20 * ** * * * ** ** consensus_1413#0 AAATACTACAACAAGTTTATGCAATCGTTGGATGCAACTTGGTGCATTTTATCCTTTTTC 120 consensus_1413#1 ATGCACCACT-CGATGTCATACCATTAATGATTCGCGGAGGATCTATTTTGCCAG----- 74 * ** ** * * * ** * ** ** * * * ***** * consensus_1413#0 TCGTAATCATAATTCAGATGATACAATTGA-ACAAGATCCAGTTGCTATGGGCGATTTGG 179 consensus_1413#1 -CACAAAAACCAGCC-GATACTACAACAGCTAGCAGAAAAAATAATTTTGAATTATTGAT 132 * ** * * * *** ***** * * *** * * * ** *** consensus_1413#0 TA-ATAAAATCATCCAAACGTGCCCTTACGATACGTTATTGGTTGTTACCGTATTTGTAT 238 consensus_1413#1 TACATTGGATAATGTAAAAAAGGCAAAAGGAGA-ATTAT--ATTGGGATGATGGTGATAG 189 ** ** ** ** *** * * * ** * **** *** * * * ** consensus_1413#0 ACGTTATTTTTTCGGGCACATAAATTTGGAGAAACTGTAGCGAGGCCATTATTTTTCGAG 298 consensus_1413#1 TTTAGATTCGTTCGAGAAGA--------GACAATTTGTATGGA------CATTTTTC--- 232 *** **** * * * ** ** **** ** ******* consensus_1413#0 TAAATATAAATCATATACGACGCTAAATGATTACTAAATAAAAATGTTCGCATTTTTTGT 358 consensus_1413#1 --AATATTGA--GAATAATACTTTATCTAATTCCAAAGCAATGAAGAGTTATTTCGATGA 288 ***** * *** ** ** * *** * ** ** * * ** ** consensus_1413#0 TCAGATTTCCTAACGATTCGAT-CACATATGAT-ATCGATGCTCAATATCTGTGGGGCAA 416 consensus_1413#1 GAAGATTATTTTA-GATAAAATACAAATATGGGGAATAACATCTAATATTTCAAAAGTT- 346 ***** * * *** ** ** ***** * * ***** * * consensus_1413#0 TTCTTTGATGATAATCCCAGTT--TTAGAAGAAAACAAGACAGAAGTAATTGCTTATTTG 474 consensus_1413#1 TTTTTAAACGATCACGAAATACGATTCGAATATATCAAGAAGGAA--AATTGCTTAAATA 404 ** ** * *** * * ** *** * * ***** *** ********* * consensus_1413#0 CCACGTGGATTATGGTATAATTTTTATACAAAAGATTCTCTTTTCGCGCTCGGCAAATAT 534 consensus_1413#1 T-AAATAATTTACGA-GTGGATTTGAGAGAAAATTTTTCGCTTT----CTTGG-AGATAT 457 * * *** * * *** * * **** ** *** ** ** * **** consensus_1413#0 TACACATTGAATGCACCACTCGATGTCAT 563 consensus_1413#1 GATGA------------------------ 462 * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |