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Apis mellifera
cluster # 1453 cluster # 1453       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1453#0 length = 549 sequences # 1  
 consensus_1453#1 length = 383 sequences # 1  
consensusID : consensus_1453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence 
                              [GCACACGGACACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGCATACACACGTACACACACATACGTACACACACGCGCACACACACGTCCCCCGATATCCATCNAGAAAAGCCCGCGCACTTTGTCCGAATATACGTGTTGAATCGGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATAAAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTCATGCAGTGGAAAATCGCGGGCGGAAACACGTGCAATATAACGACGCTTCGGAGATTCTCGGAGGCGCGCGGACGCGCGACGAATTAAACACACGCTCGTGCCGTCCTGCGCCGTGATCGCGTCGCCGTCCTCTCTTCCGCACGCGCTTACTGTGTAACCCAGTGTGTAAACGGCCAAAAGGCGTTTCGCCCGTCGAAGCCCCACTCTCCCGTGGATTGGACGATTGGAAGTGAAAGGATATTAAAGAAAAAAGAAGAAGAGAAAAAATAGAAAAT]

[+] EMBL BI506262             [GCACACGGACACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGCATACACACGTACACACACATACGTACACACACGCGCACACACACGTCCCCCGATATCCATCNAGAAAAGCCCGCGCACTTTGTCCGAATATACGTGTTGAATCGGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATAAAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTCATGCAGTGGAAAATCGCGGGCGGAAACACGTGCAATATAACGACGCTTCGGAGATTCTCGGAGGCGCGCGGACGCGCGACGAATTAAACACACGCTCGTGCCGTCCTGCGCCGTGATCGCGTCGCCGTCCTCTCTTCCGCACGCGCTTACTGTGTAACCCAGTGTGTAAACGGCCAAAAGGCGTTTCGCCCGTCGAAGCCCCACTCTCCCGTGGATTGGACGATTGGAAGTGAAAGGATATTAAAGAAAAAAGAAGAAGAGAAAAAATAGAAAAT]




>consensus_1453#0
GCACACGGACACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGC
ATACACACGTACACACACATACGTACACACACGCGCACACACACGTCCCCCGATATCCAT
CNAGAAAAGCCCGCGCACTTTGTCCGAATATACGTGTTGAATCGGAGCGAAAACGTGGAA
CGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATAAAAGAGAGAGAGAGAGA
GGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTCATGCAGTGGAAAATCGCGGGCGGAAA
CACGTGCAATATAACGACGCTTCGGAGATTCTCGGAGGCGCGCGGACGCGCGACGAATTA
AACACACGCTCGTGCCGTCCTGCGCCGTGATCGCGTCGCCGTCCTCTCTTCCGCACGCGC
TTACTGTGTAACCCAGTGTGTAAACGGCCAAAAGGCGTTTCGCCCGTCGAAGCCCCACTC
TCCCGTGGATTGGACGATTGGAAGTGAAAGGATATTAAAGAAAAAAGAAGAAGAGAAAAA
ATAGAAAAT

consensusID : consensus_1453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence 
                              [CGGACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGCATACACACGTACACACACACGCACGCACACACACGCGCACACACACGCGCACACACACGTCCCCCGATATCCGTNGTCGTCCATCGAGAAAAGCCCNNGCACTTTGTCCGAATATACGTGTTGAATCGGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATAAAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTNNTGCAGTGGAAAATCNNGGGCGGAAACACGTGCAATATAACGACGCTTGGGAGATTCTCGGAGGCGCGCGGACGCGCGACGAATTAAACACA]

[+] EMBL BI507548             [CGGACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGCATACACACGTACACACACACGCACGCACACACACGCGCACACACACGCGCACACACACGTCCCCCGATATCCGTNGTCGTCCATCGAGAAAAGCCCNNGCACTTTGTCCGAATATACGTGTTGAATCGGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATAAAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTNNTGCAGTGGAAAATCNNGGGCGGAAACACGTGCAATATAACGACGCTTGGGAGATTCTCGGAGGCGCGCGGACGCGCGACGAATTAAACACA]




>consensus_1453#1
CGGACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGCATACACA
CGTACACACACACGCACGCACACACACGCGCACACACACGCGCACACACACGTCCCCCGA
TATCCGTNGTCGTCCATCGAGAAAAGCCCNNGCACTTTGTCCGAATATACGTGTTGAATC
GGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATA
AAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTNNTGCAGTGG
AAAATCNNGGGCGGAAACACGTGCAATATAACGACGCTTGGGAGATTCTCGGAGGCGCGC
GGACGCGCGACGAATTAAACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1453#0      -----GCACACGGACACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCA 55
consensus_1453#1      CGGACACACACACACACACACGCTCGCGCACTCGCTCGCACGTACGCACGTGCATACACA 60
                            *****  ******** * * * *** ******* *   *** **  * *** **

consensus_1453#0      CGTGCATACACACGTACACACACATACGT--ACACACACGCGCACACACACGTCCCCCGA 113
consensus_1453#1      CGTACACACACACGCACGCACACACACGCGCACACACACGCGCACACACACGTCCCCCGA 120
                      *** ** ******* ** ****** ***   *****************************

consensus_1453#0      TATCC----------ATCNAGAAAAGCCCGCGCACTTTGTCCGAATATACGTGTTGAATC 163
consensus_1453#1      TATCCGTNGTCGTCCATCGAGAAAAGCCCNNGCACTTTGTCCGAATATACGTGTTGAATC 180
                      *****          *** **********  *****************************

consensus_1453#0      GGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATA 223
consensus_1453#1      GGAGCGAAAACGTGGAACGGGGGAAAGAGAGAGGGAAGAAAGAGAAGGAAAGTGAAGATA 240
                      ************************************************************

consensus_1453#0      AAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTCATGCAGTGG 283
consensus_1453#1      AAAGAGAGAGAGAGAGAGGGAGAGACGAGTGGTTGGTGTGCCGCTCCTTTNNTGCAGTGG 300
                      **************************************************  ********

consensus_1453#0      AAAATCGCGGGCGGAAACACGTGCAATATAACGACGCTTCGGAGATTCTCGGAGGCGCGC 343
consensus_1453#1      AAAATCNNGGGCGGAAACACGTGCAATATAACGACGCTTGGGAGATTCTCGGAGGCGCGC 360
                      ******  ******************************* ********************

consensus_1453#0      GGACGCGCGACGAATTAAACACACGCTCGTGCCGTCCTGCGCCGTGATCGCGTCGCCGTC 403
consensus_1453#1      GGACGCGCGACGAATTAAACACA------------------------------------- 383
                      ***********************                                     

consensus_1453#0      CTCTCTTCCGCACGCGCTTACTGTGTAACCCAGTGTGTAAACGGCCAAAAGGCGTTTCGC 463
consensus_1453#1      ------------------------------------------------------------
                                                                                  

consensus_1453#0      CCGTCGAAGCCCCACTCTCCCGTGGATTGGACGATTGGAAGTGAAAGGATATTAAAGAAA 523
consensus_1453#1      ------------------------------------------------------------
                                                                                  

consensus_1453#0      AAAGAAGAAGAGAAAAAATAGAAAAT 549
consensus_1453#1      --------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)