These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTTTAATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATGTTATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTCTATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA] [+] EMBL S78459 [CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTTTAATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATGTTATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTCTATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA] consensusID : consensus_1476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTTTAATAACAAGCTACTTTGTGACACCAGTAATGCCTTGTAATTGTAAGGCACCAGAAACTGCACTTTGCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA] [+] EMBL S78458 [GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTTTAATAACAAGCTACTTTGTGACACCAGTAATGCCTTGTAATTGTAAGGCACCAGAAACTGCACTTTGCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTCATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATATGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1476#0 -CATACGGAACAAAATGATTTCCATGCTAAGATGTACTTTCTTTTTCCTATCTGTTATTT 59 consensus_1476#1 GAATACGAAACAAAATGATTTCTATGCTGAGATGCATTTACTTATTTTTATCCGTTATTT 60 ***** ************** ***** ***** * ** *** ** **** ******* consensus_1476#0 TAATAACAAGCTATTTTGTGACACCAACGATGTCTATCAAGTGTAATTGTAAGAGGCATG 119 consensus_1476#1 TAATAACAAGCTACTTTGTGACACCAGTAATGCCT------TGTAATTGTAAGGCAC--- 111 ************* ************ *** ** ************ * consensus_1476#0 TTATAAAACCTCATATTTGTAGAAAAATATGTGGGAAGAACGGATAAATTTTTACACTTC 179 consensus_1476#1 -------------------CAGAAA--------------------------CTGCACTTT 126 ***** * ***** consensus_1476#0 TATTTCCATCAAGCAATAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTC 239 consensus_1476#1 ------------GCGCAAGACGTTGTCAACAGCATGGATAAATTTCTGCAAATTGGATTC 174 ** ******************************************* consensus_1476#0 ATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATA 299 consensus_1476#1 ATCAAAATGGTTATAATGAATTAATTGAATTTAAAATATTATACAACATTTATCTCTATA 234 ************************************************************ consensus_1476#0 TGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA 340 consensus_1476#1 TGTTATCTCTATATATGTTATCTCTATATTATTAAAAAATA 275 ***************************************** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |