These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1530 fasta sequence [ATTCATGTCTCGGCCTCTCGTGATCACGGAAGGGATGATGATTGGAGTGTTGCTAATGCTAGCCCCGATAAACGCGTTATTACTCGGCTTCGTACAGAGCACCCCCGACAACAACAAAACCGTACGGGAGTTCAACGTTTACTGGAACGTGCCCACCTTTATGTGCCATAAATACGGGCTACGGTTCGAAGAAGTATCGGAGAAATATGGTATTCTACAGAACTGGATGGATAAGTTTCGGGGCGAGGAGATCGCGATCCTTTACGACCCTGGAATGTTCCCGGCGTTGCTGAAAGACCCGAATGGGAACGTGGTGGCGAGGAACGGCGGTGTCCCGCAACTGGGCAATCTCACCAAGCATCTGCAAGTATTTCGGGACCACTTGATCAATCAGATCCCGGACAAGTCGTTTCCCGGCGTGGGGGTGATCGATTTCGAAAGTTGGAGGCCGATATTCAGACAGAACTGGGCCTCCCTCCAGCCTTACAAGAAACTGTCCGTAGAGGTGGTTCGCCGTGAGCATCCGTTCTGGGACGATCAGAGGGTGGAGCAGGAGGCGAAACGAAGGTTCGAGAAATACGGGCAGCTTTTCATGGAGGAGACGTTGAAAGCGGCGAAACGGATGAGGCCGGCCGCCAATTGGGGATACTACGCCTACCCTTATTGCTACAATCTGACGCCGAATCAGCCGAGCGCCCAATGCGAAGCGACCACCATGCAGGAGAACGATAAAATGTCGTGGCTGTTCGAGTCGGAAGACGTCCTCCTTCCGTCCGTTTACTTGAGATGGAATCTGACGAGCGGCGAAAGAGTGGGCCTGGTCGGTGGCCGCGTGAAGGAGGCGTTGAGAATAGCGAGGCAAATGACGACCAGCAGGAAGAAGGTTCTACCATATTACTGGTACAAATATCAGGATCGAAGGGACACGGATTTGAGCAGGGCTGACCTCGAGGCAACTTTACGAAAAATCACGGACCTCGGCGCCGACGGGTTCATCATTTGGGGAAGTTCCGACGATATAAACACGAAGGCGAAGTGCCTACAATTCAGGGAATACCTGAACAACGAGTTGGGCCCTGCCGTTAAACGAATCGCGTTGAACAACAACGCGAACGATCGACTGACGGTGGACGTGAGCGTGGACCAAGTGTGACCGTAGCCACCGAGCTCGGGGAAGCTGGAGCCGGAGCTGGTTCTCTTAATCGCCAGAGCGGATCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTGTGCGAACGTTCTTCGGTTTCTGAACGCTTATTACGCGACGTAGCATACGCGTGATTACCATACTCGCGATACGTGCGAGGAGGAACGGCGCCCGACCTTCGAAATGGAAAGATGTCGAACACGGGAAACGACGACGCGTGTCGTTTGAAAGCAAAGCCGATTGGTCTAGTCGATACAGTTGGGAGGCGATAGTTGCGCGATTCCAACGTAGCAGTTGGACGTGTCGTGCAACGATCGTGAGGGAGGGGAAAGAGAAATATTTATATCGTAAATAAA] [+] EMBL AMHYALURA [ATTCATGTCTCGGCCTCTCGTGATCACGGAAGGGATGATGATTGGAGTGTTGCTAATGCTAGCCCCGATAAACGCGTTATTACTCGGCTTCGTACAGAGCACCCCCGACAACAACAAAACCGTACGGGAGTTCAACGTTTACTGGAACGTGCCCACCTTTATGTGCCATAAATACGGGCTACGGTTCGAAGAAGTATCGGAGAAATATGGTATTCTACAGAACTGGATGGATAAGTTTCGGGGCGAGGAGATCGCGATCCTTTACGACCCTGGAATGTTCCCGGCGTTGCTGAAAGACCCGAATGGGAACGTGGTGGCGAGGAACGGCGGTGTCCCGCAACTGGGCAATCTCACCAAGCATCTGCAAGTATTTCGGGACCACTTGATCAATCAGATCCCGGACAAGTCGTTTCCCGGCGTGGGGGTGATCGATTTCGAAAGTTGGAGGCCGATATTCAGACAGAACTGGGCCTCCCTCCAGCCTTACAAGAAACTGTCCGTAGAGGTGGTTCGCCGTGAGCATCCGTTCTGGGACGATCAGAGGGTGGAGCAGGAGGCGAAACGAAGGTTCGAGAAATACGGGCAGCTTTTCATGGAGGAGACGTTGAAAGCGGCGAAACGGATGAGGCCGGCCGCCAATTGGGGATACTACGCCTACCCTTATTGCTACAATCTGACGCCGAATCAGCCGAGCGCCCAATGCGAAGCGACCACCATGCAGGAGAACGATAAAATGTCGTGGCTGTTCGAGTCGGAAGACGTCCTCCTTCCGTCCGTTTACTTGAGATGGAATCTGACGAGCGGCGAAAGAGTGGGCCTGGTCGGTGGCCGCGTGAAGGAGGCGTTGAGAATAGCGAGGCAAATGACGACCAGCAGGAAGAAGGTTCTACCATATTACTGGTACAAATATCAGGATCGAAGGGACACGGATTTGAGCAGGGCTGACCTCGAGGCAACTTTACGAAAAATCACGGACCTCGGCGCCGACGGGTTCATCATTTGGGGAAGTTCCGACGATATAAACACGAAGGCGAAGTGCCTACAATTCAGGGAATACCTGAACAACGAGTTGGGCCCTGCCGTTAAACGAATCGCGTTGAACAACAACGCGAACGATCGACTGACGGTGGACGTGAGCGTGGACCAAGTGTGACCGTAGCCACCGAGCTCGGGGAAGCTGGAGCCGGAGCTGGTTCTCTTAATCGCCAGAGCGGATCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTGTGCGAACGTTCTTCGGTTTCTGAACGCTTATTACGCGACGTAGCATACGCGTGATTACCATACTCGCGATACGTGCGAGGAGGAACGGCGCCCGACCTTCGAAATGGAAAGATGTCGAACACGGGAAACGACGACGCGTGTCGTTTGAAAGCAAAGCCGATTGGTCTAGTCGATACAGTTGGGAGGCGATAGTTGCGCGATTCCAACGTAGCAGTTGGACGTGTCGTGCAACGATCGTGAGGGAGGGGAAAGAGAAATATTTATATCGTAAATAAA] consensusID : consensus_1506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1427 fasta sequence [AAGAAAAAAAGAGTAGAAAATAAAAAGAAAAAAAAAGAGAATGTTGGCAAGCGCATCCCTGCAACTCCTGAAATACCCATAAAGCGTTCAAGTTCAGGTCTGAAAATATCTTATCTAATTCGTGTCATTGGCCTCGAGTCTCTCGAGCCACGACTTCGCTAACACCTCGTTTCTCTTCTATCAGCTTCGTACAGAGCACCCCCGACAACAACAAAACCGTACGGGAGTTCAACGTTTACTGGAACGTGCCCACCTTTATGTGCCATAAATACGGGCTACGGTTCGAAGAAGTATCGGAGAAATATGGTATTCTACAGAACTGGATGGATAAGTTTCGGGGCGAGGAGATCGCGATCCTTTACGACCCTGGAATGTTCCCGGCGTTGCTGAAAGACCCGAATGGTAAACAATACACGCACATTTCACGCATACACACGCACACTTTCCACGATCGTATCACGGAAAAATCACGAGGGGGGCGAAAGGGGGAGGAAAGAGGAAAGAAACGAAAGTTTGAAACGTTGTCCAGGGAACGTGGTGGCGAGGAACGGCGGTGTCCCGCAACTGGGCAATCTCACCAAGCATCTGCAAGTATTTCGGGACCACTTGATCAATCAGATCCCGGACAAGTCGTTTCCCGGCGTGGGGGTGATCGATTTCGAAAGTTGGAGGCCGATATTCAGACAGAACTGGGCCTCCCTCCAGCCTTACAAGAAACTGTCCGTAGAGGTGGTTCGCCGTGAGCATCCGTTCTGGGACGATCAGAGAGTGGAGCAGGAGGCGAAACGAAGGTTCGAGAAATACGGGCAGCTTTTCATGGAGGAGACGTTGAAAGCGGCGAAACGGATGAGGCCGGCCGCCAATTGGGGATACTACGCCTACCCTTATTGCTACAATCTGACGCCGAATCAGCCGAGCGCCCAATGCGAAGCGACCACCATGCAGGAGAACGATAAAATGTCGTGGCTGTTCGAGTCGGAAGACGTCCTCCTTCCGTCCGTTTACTTGAGATGGAATCTGACGAGCGGCGAAAGAGTGGGCCTGGTCGGTGGCCGCGTGAAGGAGGCGTTGAGAATAGCGAGGCAAATGACGACCAGCAGGAAGAAGGTTCTACCCTATTACTGGTACAAATATCAGGATCGAAGGGACACGGATTTGAGCAGGGCTGACCTCGAGGCAACTTTACGAAAAATCACGGACCTCGGCGCCGACGGGTTCATCATTTGGGGAAGTTCCGACGATATAAACACGAAGGCGAAGTGTCTACAATTCAGGGAATACCTGAACAACGAGTTGGGCCCTGCCGTTAAACGAATCGCGTTGAACAACAACGCGAACAGTCGACTGACGGTGGACGTGAGCGTGGACCAAGTGTGACCGTAGCCACCGAGCTCGGGGAAGCTGGAGCCGGAGCTGGTTCTCTTAAT] [+] EMBL AMHYALURB [AAGAAAAAAAGAGTAGAAAATAAAAAGAAAAAAAAAGAGAATGTTGGCAAGCGCATCCCTGCAACTCCTGAAATACCCATAAAGCGTTCAAGTTCAGGTCTGAAAATATCTTATCTAATTCGTGTCATTGGCCTCGAGTCTCTCGAGCCACGACTTCGCTAACACCTCGTTTCTCTTCTATCAGCTTCGTACAGAGCACCCCCGACAACAACAAAACCGTACGGGAGTTCAACGTTTACTGGAACGTGCCCACCTTTATGTGCCATAAATACGGGCTACGGTTCGAAGAAGTATCGGAGAAATATGGTATTCTACAGAACTGGATGGATAAGTTTCGGGGCGAGGAGATCGCGATCCTTTACGACCCTGGAATGTTCCCGGCGTTGCTGAAAGACCCGAATGGTAAACAATACACGCACATTTCACGCATACACACGCACACTTTCCACGATCGTATCACGGAAAAATCACGAGGGGGGCGAAAGGGGGAGGAAAGAGGAAAGAAACGAAAGTTTGAAACGTTGTCCAGGGAACGTGGTGGCGAGGAACGGCGGTGTCCCGCAACTGGGCAATCTCACCAAGCATCTGCAAGTATTTCGGGACCACTTGATCAATCAGATCCCGGACAAGTCGTTTCCCGGCGTGGGGGTGATCGATTTCGAAAGTTGGAGGCCGATATTCAGACAGAACTGGGCCTCCCTCCAGCCTTACAAGAAACTGTCCGTAGAGGTGGTTCGCCGTGAGCATCCGTTCTGGGACGATCAGAGAGTGGAGCAGGAGGCGAAACGAAGGTTCGAGAAATACGGGCAGCTTTTCATGGAGGAGACGTTGAAAGCGGCGAAACGGATGAGGCCGGCCGCCAATTGGGGATACTACGCCTACCCTTATTGCTACAATCTGACGCCGAATCAGCCGAGCGCCCAATGCGAAGCGACCACCATGCAGGAGAACGATAAAATGTCGTGGCTGTTCGAGTCGGAAGACGTCCTCCTTCCGTCCGTTTACTTGAGATGGAATCTGACGAGCGGCGAAAGAGTGGGCCTGGTCGGTGGCCGCGTGAAGGAGGCGTTGAGAATAGCGAGGCAAATGACGACCAGCAGGAAGAAGGTTCTACCCTATTACTGGTACAAATATCAGGATCGAAGGGACACGGATTTGAGCAGGGCTGACCTCGAGGCAACTTTACGAAAAATCACGGACCTCGGCGCCGACGGGTTCATCATTTGGGGAAGTTCCGACGATATAAACACGAAGGCGAAGTGTCTACAATTCAGGGAATACCTGAACAACGAGTTGGGCCCTGCCGTTAAACGAATCGCGTTGAACAACAACGCGAACAGTCGACTGACGGTGGACGTGAGCGTGGACCAAGTGTGACCGTAGCCACCGAGCTCGGGGAAGCTGGAGCCGGAGCTGGTTCTCTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1506#0 ------------------------------------------------------------ consensus_1506#1 AAGAAAAAAAGAGTAGAAAATAAAAAGAAAAAAAAAGAGAATGTTGGCAAGCGCATCCCT 60 consensus_1506#0 -------------------------------ATTCATGTCTCGGCCTCTCGTGATCACGG 29 consensus_1506#1 GCAACTCCTGAAATACCCATAAAGCGTTCAAGTTCAGGTCTGAAAATATC-TTATCTAAT 119 **** **** * ** * *** consensus_1506#0 AAGGGATGATGAT-TGGAGTGTTGCTAATGCTAGCCCCGATAAA--CGCGTTATTACTC- 85 consensus_1506#1 TCGTGTCATTGGCCTCGAGTCTCTCGAGCCACGACTTCGCTAACACCTCGTTTCTCTTCT 179 * * ** * **** * * * * ** *** * **** * ** consensus_1506#0 ---GGCTTCGTACAGAGCACCCCCGACAACAACAAAACCGTACGGGAGTTCAACGTTTAC 142 consensus_1506#1 ATCAGCTTCGTACAGAGCACCCCCGACAACAACAAAACCGTACGGGAGTTCAACGTTTAC 239 ******************************************************** consensus_1506#0 TGGAACGTGCCCACCTTTATGTGCCATAAATACGGGCTACGGTTCGAAGAAGTATCGGAG 202 consensus_1506#1 TGGAACGTGCCCACCTTTATGTGCCATAAATACGGGCTACGGTTCGAAGAAGTATCGGAG 299 ************************************************************ consensus_1506#0 AAATATGGTATTCTACAGAACTGGATGGATAAGTTTCGGGGCGAGGAGATCGCGATCCTT 262 consensus_1506#1 AAATATGGTATTCTACAGAACTGGATGGATAAGTTTCGGGGCGAGGAGATCGCGATCCTT 359 ************************************************************ consensus_1506#0 TACGACCCTGGAATGTTCCCGGCGTTGCTGAAAGACCCGAATGG---------------- 306 consensus_1506#1 TACGACCCTGGAATGTTCCCGGCGTTGCTGAAAGACCCGAATGGTAAACAATACACGCAC 419 ******************************************** consensus_1506#0 ------------------------------------------------------------ consensus_1506#1 ATTTCACGCATACACACGCACACTTTCCACGATCGTATCACGGAAAAATCACGAGGGGGG 479 consensus_1506#0 ---------------------------------------------------GAACGTGGT 315 consensus_1506#1 CGAAAGGGGGAGGAAAGAGGAAAGAAACGAAAGTTTGAAACGTTGTCCAGGGAACGTGGT 539 ********* consensus_1506#0 GGCGAGGAACGGCGGTGTCCCGCAACTGGGCAATCTCACCAAGCATCTGCAAGTATTTCG 375 consensus_1506#1 GGCGAGGAACGGCGGTGTCCCGCAACTGGGCAATCTCACCAAGCATCTGCAAGTATTTCG 599 ************************************************************ consensus_1506#0 GGACCACTTGATCAATCAGATCCCGGACAAGTCGTTTCCCGGCGTGGGGGTGATCGATTT 435 consensus_1506#1 GGACCACTTGATCAATCAGATCCCGGACAAGTCGTTTCCCGGCGTGGGGGTGATCGATTT 659 ************************************************************ consensus_1506#0 CGAAAGTTGGAGGCCGATATTCAGACAGAACTGGGCCTCCCTCCAGCCTTACAAGAAACT 495 consensus_1506#1 CGAAAGTTGGAGGCCGATATTCAGACAGAACTGGGCCTCCCTCCAGCCTTACAAGAAACT 719 ************************************************************ consensus_1506#0 GTCCGTAGAGGTGGTTCGCCGTGAGCATCCGTTCTGGGACGATCAGAGGGTGGAGCAGGA 555 consensus_1506#1 GTCCGTAGAGGTGGTTCGCCGTGAGCATCCGTTCTGGGACGATCAGAGAGTGGAGCAGGA 779 ************************************************ *********** consensus_1506#0 GGCGAAACGAAGGTTCGAGAAATACGGGCAGCTTTTCATGGAGGAGACGTTGAAAGCGGC 615 consensus_1506#1 GGCGAAACGAAGGTTCGAGAAATACGGGCAGCTTTTCATGGAGGAGACGTTGAAAGCGGC 839 ************************************************************ consensus_1506#0 GAAACGGATGAGGCCGGCCGCCAATTGGGGATACTACGCCTACCCTTATTGCTACAATCT 675 consensus_1506#1 GAAACGGATGAGGCCGGCCGCCAATTGGGGATACTACGCCTACCCTTATTGCTACAATCT 899 ************************************************************ consensus_1506#0 GACGCCGAATCAGCCGAGCGCCCAATGCGAAGCGACCACCATGCAGGAGAACGATAAAAT 735 consensus_1506#1 GACGCCGAATCAGCCGAGCGCCCAATGCGAAGCGACCACCATGCAGGAGAACGATAAAAT 959 ************************************************************ consensus_1506#0 GTCGTGGCTGTTCGAGTCGGAAGACGTCCTCCTTCCGTCCGTTTACTTGAGATGGAATCT 795 consensus_1506#1 GTCGTGGCTGTTCGAGTCGGAAGACGTCCTCCTTCCGTCCGTTTACTTGAGATGGAATCT 1019 ************************************************************ consensus_1506#0 GACGAGCGGCGAAAGAGTGGGCCTGGTCGGTGGCCGCGTGAAGGAGGCGTTGAGAATAGC 855 consensus_1506#1 GACGAGCGGCGAAAGAGTGGGCCTGGTCGGTGGCCGCGTGAAGGAGGCGTTGAGAATAGC 1079 ************************************************************ consensus_1506#0 GAGGCAAATGACGACCAGCAGGAAGAAGGTTCTACCATATTACTGGTACAAATATCAGGA 915 consensus_1506#1 GAGGCAAATGACGACCAGCAGGAAGAAGGTTCTACCCTATTACTGGTACAAATATCAGGA 1139 ************************************ *********************** consensus_1506#0 TCGAAGGGACACGGATTTGAGCAGGGCTGACCTCGAGGCAACTTTACGAAAAATCACGGA 975 consensus_1506#1 TCGAAGGGACACGGATTTGAGCAGGGCTGACCTCGAGGCAACTTTACGAAAAATCACGGA 1199 ************************************************************ consensus_1506#0 CCTCGGCGCCGACGGGTTCATCATTTGGGGAAGTTCCGACGATATAAACACGAAGGCGAA 1035 consensus_1506#1 CCTCGGCGCCGACGGGTTCATCATTTGGGGAAGTTCCGACGATATAAACACGAAGGCGAA 1259 ************************************************************ consensus_1506#0 GTGCCTACAATTCAGGGAATACCTGAACAACGAGTTGGGCCCTGCCGTTAAACGAATCGC 1095 consensus_1506#1 GTGTCTACAATTCAGGGAATACCTGAACAACGAGTTGGGCCCTGCCGTTAAACGAATCGC 1319 *** ******************************************************** consensus_1506#0 GTTGAACAACAACGCGAACGATCGACTGACGGTGGACGTGAGCGTGGACCAAGTGTGACC 1155 consensus_1506#1 GTTGAACAACAACGCGAACAGTCGACTGACGGTGGACGTGAGCGTGGACCAAGTGTGACC 1379 ******************* *************************************** consensus_1506#0 GTAGCCACCGAGCTCGGGGAAGCTGGAGCCGGAGCTGGTTCTCTTAATCGCCAGAGCGGA 1215 consensus_1506#1 GTAGCCACCGAGCTCGGGGAAGCTGGAGCCGGAGCTGGTTCTCTTAAT------------ 1427 ************************************************ consensus_1506#0 TCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATTGTGCGAACGTTCTTCGGTTTCT 1275 consensus_1506#1 ------------------------------------------------------------ consensus_1506#0 GAACGCTTATTACGCGACGTAGCATACGCGTGATTACCATACTCGCGATACGTGCGAGGA 1335 consensus_1506#1 ------------------------------------------------------------ consensus_1506#0 GGAACGGCGCCCGACCTTCGAAATGGAAAGATGTCGAACACGGGAAACGACGACGCGTGT 1395 consensus_1506#1 ------------------------------------------------------------ consensus_1506#0 CGTTTGAAAGCAAAGCCGATTGGTCTAGTCGATACAGTTGGGAGGCGATAGTTGCGCGAT 1455 consensus_1506#1 ------------------------------------------------------------ consensus_1506#0 TCCAACGTAGCAGTTGGACGTGTCGTGCAACGATCGTGAGGGAGGGGAAAGAGAAATATT 1515 consensus_1506#1 ------------------------------------------------------------ consensus_1506#0 TATATCGTAAATAAA 1530 consensus_1506#1 --------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |