These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAATTTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATGAAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATACTACGCAAGACTTGTCCGTAATCGTGAAAGAGCTTCCAAGAGATCCGATAAATCGTTTTTTTGTTATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGCCCGACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCGAAATTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAGGCGATAAACCCACAAAACCAGAATCAATTTTGGTGTTACAAGACCTTCGTGATTCTGATTTTCGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGG] [+] EMBL BI509253 [GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAATTTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATGAAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATACTACGCAAGACTTGTCCGTAATCGTGAAAGAGCTTCCAAGAGATCCGATAAATCGTTTTTTTGTTATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGCCCGACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCGAAATTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAGGCGATAAACCCACAAAACCAGAATCAATTTTGGTGTTACAAGACCTTCGTGATTCTGATTTTCGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGG] consensusID : consensus_1530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGGCAATGAAAGTTGTAGAAGGAGAGCCTCTGTCCGAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCAACAAATTCGTATCAACAATTGGTTGAACGTGGTTTACCGCAACTTGCCAAATTTTTGAAAAGTACACCAGGATTGGAAGCGATACTCGAGGCCTTAGTTATCCTAAGACCTAGGACTAAACATATAATATCTGCACTTCTTGCACCAGAAGGCCCGCTAGCGTTGATCACGCATACAGACTTTTGGTGTAATAATTTACTTTTCAAGGAAGGACCCTCTGGTTTCGAATGTTGTATCCTNNNTTGGCAAATGGTTACTTACAGTAGACCGACTAACGACATTGCTCTGTTATTAGTAAGCTCATTGCCAACCGAACTACGCCGAAAGCATACGGAAACTTTCCTCGATATTTATTGGGATGCG] [+] EMBL BI515188 [CGAAATATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAAATTGCATTAGAAGCTATAGCACGTATACATGCACACTCTTTGGCAATGAAAGTTGTAGAAGGAGAGCCTCTGTCCGAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCAACAAATTCGTATCAACAATTGGTTGAACGTGGTTTACCGCAACTTGCCAAATTTTTGAAAAGTACACCAGGATTGGAAGCGATACTCGAGGCCTTAGTTATCCTAAGACCTAGGACTAAACATATAATATCTGCACTTCTTGCACCAGAAGGCCCGCTAGCGTTGATCACGCATACAGACTTTTGGTGTAATAATTTACTTTTCAAGGAAGGACCCTCTGGTTTCGAATGTTGTATCCTNNNTTGGCAAATGGTTACTTACAGTAGACCGACTAACGACATTGCTCTGTTATTAGTAAGCTCATTGCCAACCGAACTACGCCGAAAGCATACGGAAACTTTCCTCGATATTTATTGGGATGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1530#0 GAGAGGAACAGAATCAGATAGAATTTAACAAGGAGTGGCTCGGTGGTGTTCTAAAGGAAT 60 consensus_1530#1 --------CGAAAT--ATTAAATTTCGTGAAGGAATGACATACGATCAAACTAAA---AT 47 * *** ** * ** ***** ** * ***** ** consensus_1530#0 TTCACAAAGAACCGGTCACGATAAGCGAATGTAACGTAAGTCCCGGCTGTACGAGTAATG 120 consensus_1530#1 TGCATTAGAA----GCTATAGCACGTATACATG-CACACTCTTTGGCAATGAAAGTTGTA 102 * ** * * * * * * * * * * *** * *** * consensus_1530#0 AAAGCGCGCTCAGTGATATTATGCGTCTTAAAATCAAGTATATGTTGAACGACACGAATA 180 consensus_1530#1 GAAGG------AGAGCCTCTGTCCGAACGTTATCCGTTTCTCTTCCAAACAGCAAAAGCA 156 *** ** * * * ** * * * * * *** ** * * consensus_1530#0 CTACGCAAGACTTGTCCGTAATCG--TGAAAGAGCTTCCAAGAGATCCGATAAATCGTTT 238 consensus_1530#1 ACA---AATTCGTATCAACAATTGGTTGAACGTGGTTTACCGCAACTTGCCAAATTTTTG 213 * ** * * ** *** * **** * * ** * * * **** ** consensus_1530#0 TTTTGT-TATCGAAGGCCAATTTGATCTTCGGGAAATTAAATTTTATACACAGGTTATGC 297 consensus_1530#1 AAAAGTACACCAGGATTGGAAGCGATACTCGAGGCCTTAGTTATCCTA-AGACCTAGGAC 272 ** * * * *** *** * *** * * ** * * * * consensus_1530#0 CCGACTTAAAGGAATTTCAAAAGAAACAACTAACATCTCAAGGAAATAAATCGGACATCG 357 consensus_1530#1 TAAACATATAATATCTGCACTTCTTGCACCAGAAGGCCCGCTAGCGTTGATCACGCATAC 332 ** ** * * * ** ** * * * * * *** *** consensus_1530#0 AAATTCTTCTGTCAGTTCCAGTATGCTACTTTGCAGATTATACACCAGCTGATGAATCAG 417 consensus_1530#1 AGACTTTT------GGTGTAATAATTTACTTTTCA-AGGAAGGACCCTCTGGTTTCGAAT 385 * * * ** * * * ** ****** ** * * *** *** * * consensus_1530#0 GCGATAAACCCACAAAACCAG-AATCAATTTTGGTGTTACAAG-ACCTTCGTGATTCTGA 475 consensus_1530#1 GTTGTATCCTNNNTTGGCAAATGGTTACTTACAGTAGACCGACTAACGACATTGCTCTGT 445 * ** * * * * * ** ** * * * * * * **** consensus_1530#0 TTTTCGAAATATTAAATTTCGTGAAGGAATGACAT-ACGATCAAACTAAAATTGCATTAG 534 consensus_1530#1 TATTAGTAAGCTCA---TTGCCAACCGAACTACGCCGAAAGCATACGGAAACTTTCCTCG 502 * ** * ** * * ** * *** ** * ** ** *** * * * consensus_1530#0 AAGCTATAGCACGTATACATGCACACTCTTTGG 567 consensus_1530#1 ATATT-TATTG-GGATGCG-------------- 519 * * ** * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |