These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [AGAGATCGTGACCATGATTTAAGACGACAAAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTGGAGCTGGTAGTTCCTCCTCCAATTCTCATCCATTACCTGTTAGTCATCCAAATAATGATCACTTGACTATGCATCAACTACAATTTGGAGACAGACTATATTCAAAAGTTTATGCATTGCAACCCGCATTAGCTGCTAAAATAACTGGTATGCTGTTAGAGCTGCCCCCTGCACAGCTGTTGATGTTACTAGCTTCAGAAGATGCTCTGCAGCAAAAAGTAGAGGAAGCATTTGAAATAATACGTAGTCATAGTCAGGAATCGGCAAAAGAAGCGTTGTTGGATCTCGATGTATTCAGTTTGATTGCACGTTGCGGAGCTAATAAGAAAAAAATTGAGAATAGTA] [+] EMBL BI515128 [AGAGATCGTGACCATGATTTAAGACGACAAAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTGGAGCTGGTAGTTCCTCCTCCAATTCTCATCCATTACCTGTTAGTCATCCAAATAATGATCACTTGACTATGCATCAACTACAATTTGGAGACAGACTATATTCAAAAGTTTATGCATTGCAACCCGCATTAGCTGCTAAAATAACTGGTATGCTGTTAGAGCTGCCCCCTGCACAGCTGTTGATGTTACTAGCTTCAGAAGATGCTCTGCAGCAAAAAGTAGAGGAAGCATTTGAAATAATACGTAGTCATAGTCAGGAATCGGCAAAAGAAGCGTTGTTGGATCTCGATGTATTCAGTTTGATTGCACGTTGCGGAGCTAATAAGAAAAAAATTGAGAATAGTA] consensusID : consensus_1537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [AATAGAAATTACTTTGGTTTTTTATTTTAAAAATATAAATATATATATATATATTTTTTTTTTTTTAAAGGCATTGCTTGCAAATGAAAAACTGCCTAACCTGGAAGCTGCACAAGTGGGATCAAAATATACCCAATATAATGTTCTTCGAAAGCTAAAAAGTAGAGATCGTNNNCATGATTTAAGACGNNAAGTAAATATAATAATNNATATAAAAAAAAAAAAAAAATTAAAAAATGTTTTTTTTTTTGTTTATGGGAGCTATCTCATTACAGAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTG] [-] EMBL BI513287 [AATAGAAATTACTTTGGTTTTTTATTTTAAAAATATAAATATATATATATATATTTTTTTTTTTTTAAAGGCATTGCTTGCAAATGAAAAACTGCCTAACCTGGAAGCTGCACAAGTGGGATCAAAATATACCCAATATAATGTTCTTCGAAAGCTAAAAAGTAGAGATCGTNNNCATGATTTAAGACGNNAAGTAAATATAATAATNNATATAAAAAAAAAAAAAAAATTAAAAAATGTTTTTTTTTTTGTTTATGGGAGCTATCTCATTACAGAATCCTCGATCTTCTGGAAAATGTCGAGAGACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1537#0 AGAGATCGTGACCATGATTTAAGACGACAAAATCCTCGATCTTCTGGAAAATGTCGAGAG 60 consensus_1537#1 ------------------------------------------------------------ consensus_1537#0 ACACGTAGAACATTATCATTTGAAGCTCGTGTTTTTCATCCATCCAGTTCTGTTGAAGGA 120 consensus_1537#1 ---AATAGAA----ATTACTTTGGTTTTTTATTTTAAAAATATAAATATATATATATATA 53 ***** ** * ** * * **** * ** * * * * * * consensus_1537#0 ACCAGTAATTCTGGAGCTGGTAGTTCCTCCTCCAATTCTCATCCATTACCTGTTAGTCAT 180 consensus_1537#1 TTTTTTTTTTTTTAAAGGCATTGCTTGCAAATGAAAAACTGCCTA--ACCTGGAAGCTGC 111 * ** * * * * * ** * * ***** ** consensus_1537#0 CCAAATAATGATCACTTGACTATGCATCAACTACAATTTGGAGACAGACTATATTCAAAA 240 consensus_1537#1 ACAAGTGG-GATCAAAATATACCCAATATAATGTTCTTCGAAAGCTAAAAAGTAGAGATC 170 *** * ***** * ** * * ** * * * * * * consensus_1537#0 GTTTATGCATTGCAACCCGCATTAGCTGCTAAAATAACTGGTATGCTGTTAGAGCTGCCC 300 consensus_1537#1 GTNNNCATGATTTAAGACGNNA-AGTAAATATAATAATNNATATAAAAAAAAAAAAAAA- 228 ** * ** ** ** ** ***** *** * * consensus_1537#0 CCTGCACAGCTGTTGATGTTACTAGCTTCAGAAGATGCTCTGCAGCAAAAAGTAGAGGAA 360 consensus_1537#1 -ATTAAAAAATGTTTTTTTTTTTGTTTATGGGAGCTATCTCATTACAGAATCCTC---GA 284 * * * **** * ** * * * ** * ** ** * consensus_1537#0 GCATTTGAAATAATACGTAGTCATAGTCAGGA-ATCGGCAAAAGAAGCGTTGTTGGATCT 419 consensus_1537#1 TCTTCTGGAA-AATGTCGAGAGACACGTAGAACATTATCATTTGAAGC-TCGT--GTTTT 340 * * ** ** *** ** * * ** * ** ** ***** * ** * * * consensus_1537#0 CGATGTATTCAGTTTGATTGCACGTTGCGGAGCTAATAAGAAAAAAATTGAGAATAGTA 478 consensus_1537#1 TCATCCATCCAGTTCTGTTGAAGGAACCAGTAATTCTG--------------------- 378 ** ** ***** *** * * * * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |