These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 577 fasta sequence [AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTGTTGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATGGTACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT] [+] EMBL BI515541 [AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGT ] [+] EMBL BI513865 [ TGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTGTTGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATGGTACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT] [+] EMBL BI513953 [ TGTAGATAGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGNTTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGT ] consensusID : consensus_158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTAGGTATGTACCTTGCCACGAAGAATCAAACAGGACTGTGTCCACCAACTGCGTGACTTTGCTGTGCATTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTATAAAT] [+] EMBL BI514702 [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTAGGTATGTACCTTGCCACGAAGAATCAAACAGGACTGTGTCCACCAACTGCGTGACTTTGCTGTGCATTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTATAAAT] consensusID : consensus_158#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAATA] [+] EMBL BI515158 [AGAGGAAACTATTATCATGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAATA] [+] EMBL BI514327 [ TGAATCAAATCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACATGCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGATGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGGTCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAGCGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGGAGACGGCCGATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAACTCTACCACAACAGTTTCTTTTATATTCCAGTTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_158#0 AGACAGAGCAGAAGCTGCGATGCTTGCTGTAGATAGAGGAAACTATTATCATGAATCAAA 60 consensus_158#2 ----------------------------------AGAGGAAACTATTATCATGAATCAAA 26 consensus_158#1 ----------------------------------AGAGGAAACTATTATCATGAATCAAA 26 ************************** consensus_158#0 TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT 120 consensus_158#2 TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT 86 consensus_158#1 TCCATATCTTGATCAACCAAGAAAAATTGGTTACAATGTTACTATTAGTGCCCCTCACAT 86 ************************************************************ consensus_158#0 GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA 180 consensus_158#2 GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA 146 consensus_158#1 GCACGCATATGCTTTGTCTATTCTATCTGACCAATTGTTCGATGGAGCAAAAGCATTGGA 146 ************************************************************ consensus_158#0 TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG 240 consensus_158#2 TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG 206 consensus_158#1 TGTTGGTTCTGGATCTGGTTACCTGACTGCATGTATGGCATTCATGGTTGGTTCACGTGG 206 ************************************************************ consensus_158#0 TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG 300 consensus_158#2 TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG 266 consensus_158#1 TCGTGTAATCGGAATCGATCATATTCCAGAATTAATAGAAATTTCTACGAAAAACGTAAG 266 ************************************************************ consensus_158#0 CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGG-AGACGGCC 359 consensus_158#2 CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTGGG-AGACGGCC 325 consensus_158#1 CGAAGATTGTCCTCATTTCATCCAGGAAGAACGCGTTAAATTTGTAGTAGGTATGTACCT 326 ************************************************ ** * * consensus_158#0 GATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAA 419 consensus_158#2 GATTGGGATATGCTGCTGACAGCCCTTACAATGCGATTCACGTTGGAGCAGCAGCGGAAA 385 consensus_158#1 TGCCACGAAGAATCA--AACAGGACTGTGTCCACCAACTGCGT---GACTTTGCTGTGCA 381 ** **** ** * * *** * * * consensus_158#0 CTCTACCACAACAGTTAATAGATCAACTGACTCCTGGTGGACGGCTAATTTGTCCAGTTG 479 consensus_158#2 CTCTACCACAACAGTT------TCTTTTATATTCCAGTTAATA----------------- 422 consensus_158#1 TTATGTAAAAATAGACCAAAGACTAACAACAGGTCATTATAAAT---------------- 425 * * * ** ** * * consensus_158#0 TTGCTATAGNNGGTTTTCAAAGGTTTCAAGATCTGGTACAAGTAGATAAAAACATAGATG 539 consensus_158#2 ------------------------------------------------------------ consensus_158#1 ------------------------------------------------------------ consensus_158#0 GTACAATCACAAAGAAAAAATTAATGCAAGTTTCCTAT 577 consensus_158#2 -------------------------------------- consensus_158#1 -------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |