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Apis mellifera
cluster # 1629 cluster # 1629       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1629#0 length = 442 sequences # 1  
consensus_1629#1 length = 368 sequences # 1  

consensusID : consensus_1629#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [CAAGAGGACACCCAGTGTCGACGATCGCAATGAATCGAAAGGAAGTGAGAGGGAAACGGGGCATCCTCGACGATCGTAGAAGATGCCTCGGTTTACAAATTTTCAGCGTAATCTCGTGGCACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATACCCTCCCTCCTCCACTTTTTCTAACTTACCACCACGCGTTCCCCCCACTCCCATTACTCCCATCTCTTCTTCCCACCCACTCCCCCACCTCCACTCGGCGGTTACCTACCGAGTGGTTCGACACTTCACCTTCCTTCCTTCCTTTTTCTTTTCCTTCGTTACTCGTGACCTTAGTATCNNNTTATTTATTTAGAGTTCGAGCGAGTATAAACTTACCGCCGGATGTGGAAGGAATTAATTTAGGTATTCGCTCTTTTCACGT]

[+] EMBL BI515637             [CAAGAGGACACCCAGTGTCGACGATCGCAATGAATCGAAAGGAAGTGAGAGGGAAACGGGGCATCCTCGACGATCGTAGAAGATGCCTCGGTTTACAAATTTTCAGCGTAATCTCGTGGCACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATACCCTCCCTCCTCCACTTTTTCTAACTTACCACCACGCGTTCCCCCCACTCCCATTACTCCCATCTCTTCTTCCCACCCACTCCCCCACCTCCACTCGGCGGTTACCTACCGAGTGGTTCGACACTTCACCTTCCTTCCTTCCTTTTTCTTTTCCTTCGTTACTCGTGACCTTAGTATCNNNTTATTTATTTAGAGTTCGAGCGAGTATAAACTTACCGCCGGATGTGGAAGGAATTAATTTAGGTATTCGCTCTTTTCACGT]


>consensus_1629#0 CAAGAGGACACCCAGTGTCGACGATCGCAATGAATCGAAAGGAAGTGAGAGGGAAACGGG GCATCCTCGACGATCGTAGAAGATGCCTCGGTTTACAAATTTTCAGCGTAATCTCGTGGC ACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATA CCCTCCCTCCTCCACTTTTTCTAACTTACCACCACGCGTTCCCCCCACTCCCATTACTCC CATCTCTTCTTCCCACCCACTCCCCCACCTCCACTCGGCGGTTACCTACCGAGTGGTTCG ACACTTCACCTTCCTTCCTTCCTTTTTCTTTTCCTTCGTTACTCGTGACCTTAGTATCNN NTTATTTATTTAGAGTTCGAGCGAGTATAAACTTACCGCCGGATGTGGAAGGAATTAATT TAGGTATTCGCTCTTTTCACGT



consensusID : consensus_1629#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [GAGAGAGAAACGGGGCATCCTCGACGATCGTAGAAGATGCCTCGGTTTATAAATTTTCAGCGTAATCTCGTGGCACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATAAATATATATATATATATATACATTACGTACGTGTACATGTATNNNNAGAGAGAGAGAGAGAGAGAGATCANNATGAAAGAAATTTTAATGAAAAAAAAATTCAAAAATAATATTAGAAATTTTTAGAAAATGGANAATGTTCTGATAACATGACAATTATCTGATAGAAATGATTTATTTGCAGAACTAAAATTTTCGGATGAAAGAAGAGGGAGAAAATACAAGAAAAATATA]

[+] EMBL BI515012             [GAGAGAGAAACGGGGCATCCTCGACGATCGTAGAAGATGCCTCGGTTTATAAATTTTCAGCGTAATCTCGTGGCACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATAAATATATATATATATATATACATTACGTACGTGTACATGTATNNNNAGAGAGAGAGAGAGAGAGAGATCANNATGAAAGAAATTTTAATGAAAAAAAAATTCAAAAATAATATTAGAAATTTTTAGAAAATGGANAATGTTCTGATAACATGACAATTATCTGATAGAAATGATTTATTTGCAGAACTAAAATTTTCGGATGAAAGAAGAGGGAGAAAATACAAGAAAAATATA]


>consensus_1629#1 GAGAGAGAAACGGGGCATCCTCGACGATCGTAGAAGATGCCTCGGTTTATAAATTTTCAG CGTAATCTCGTGGCACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAG GAATTATATATATAAATATATATATATATATATACATTACGTACGTGTACATGTATNNNN AGAGAGAGAGAGAGAGAGAGATCANNATGAAAGAAATTTTAATGAAAAAAAAATTCAAAA ATAATATTAGAAATTTTTAGAAAATGGANAATGTTCTGATAACATGACAATTATCTGATA GAAATGATTTATTTGCAGAACTAAAATTTTCGGATGAAAGAAGAGGGAGAAAATACAAGA AAAATATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1629#0      CAAGAGGACACCCAGTGTCGACGATCGCAATGAATCGAAAGGAAGTGAGAGGGAAACGGG 60
consensus_1629#1      ----------------------------------------------GAGAGAGAAACGGG 14
                                                                    ***** ********

consensus_1629#0      GCATCCTCGACGATCGTAGAAGATGCCTCGGTTTACAAATTTTCAGCGTAATCTCGTGGC 120
consensus_1629#1      GCATCCTCGACGATCGTAGAAGATGCCTCGGTTTATAAATTTTCAGCGTAATCTCGTGGC 74
                      *********************************** ************************

consensus_1629#0      ACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATA 180
consensus_1629#1      ACGTAATTACCACGAATAATCGTTAAAGAGTCTGAGATTTAGCAAGGAATTATATATATA 134
                      ************************************************************

consensus_1629#0      CCCTCCCTCCTCCACTTTTTC-TAACTTACCACCACGCGTTCCCCCCACTCCCATTACTC 239
consensus_1629#1      AATATATATATATATATATACATTACGTACGTGTACATGTATNNNNAGAGAGAGAGAGAG 194
                                *  *  * * * * ** ***    **  **                *   

consensus_1629#0      CCATCTCTTCTTCCCACCCACTCCCCCACCTCCACTCGGCGGTTACCTACCGAGTGGTTC 299
consensus_1629#1      AGAGAGATCANNATGAAAGA-------AATTTTAATGAAAAAAAAATTCAAAAATAATAT 247
                        *    *       *   *       *  *  * *        *  *    * *  *  

consensus_1629#0      GACACTTCACCTTCCTTCCTTCCTTTTTCTTTTCCTTCGTTACTCGTGACCTTAGTATCN 359
consensus_1629#1      TAGAAATTTTTAGAAAATGGANAATGTTCTGATAACATGACAATTAT----CTGATAG-A 302
                       * *  *                 * ****  *     *  * *  *     *  **   

consensus_1629#0      NNTTATTTATTTAGAGTTCGAGCGAGTATAAACTTACCGCCGGATGTGGAAGGAATTAAT 419
consensus_1629#1      AATGATTTATTTGCAG--------AACTAAAATTTTCGGATGAAAGAAGAGGGAGAAAAT 354
                        * ********  **        *    *** ** * *  * * *  ** ***   ***

consensus_1629#0      TTAGGTATTCGCTCTTTTCACGT 442
consensus_1629#1      ACAAGAAAAATATA--------- 368
                        * * *     *          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)