These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 598 fasta sequence [AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATTGTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG] [+] EMBL BI507600 [AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATTGTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCAC ] [+] EMBL BI515896 [ TTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGNGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCAC ] [+] EMBL BI515820 [ CGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG] [+] EMBL BI512867 [ CGGTGCGCCTCGGGGGCGCTGCCGCAAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACACGGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCGCACGATTCGAGGAGGAAGACACGGCCAGCTTGAAGAATATGAATTTACTGACAGAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAAT ] consensusID : consensus_163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT] [+] EMBL BI503825 [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTGGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGGTTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTGATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT] [+] EMBL BI511126 [GTAAAAAGAAAAACGCAAATATATGAAACGCGTATATGTTTTCCGGTCCCTTACAGAAAAATCACTGATATTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAACAATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAGCGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCGGCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATTACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGAACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_163#0 AGCGGATATTGCATAGTCGGGCAATTGGTTTTAATGTCGATCGTCTTTTTCTTTTCTATT 60 consensus_163#1 ------------------------------------------------------------ consensus_163#0 GTCTTGTAAAAGAATCATAAAGCAAACGACAAAAACGGTGCGCCTCGGGGGCGCTGCCGC 120 consensus_163#1 ------------------------------------------------------------ consensus_163#0 AAGTGTACGGTGCCCAATTTCATCACGGTGATAAACTTCGCTGCCGGTTCTTCTCTACAC 180 consensus_163#1 --------------------------------------------------GTAAAAAGAA 10 * * * consensus_163#0 GGTCAATAATGAGGGACATGGCGGGCAAGATCGCCGAGTTGAAGTTCGAGGCACCCCTCG 240 consensus_163#1 AAACGCAAATATATGAAACG-CGTATATGTTTTCCG-GTCCCTTACAGAAAAATCACTGA 68 * *** ** * * ** * * * *** ** ** * * ** consensus_163#0 CACGATTCGAGGAGGAAGACA--CGGCCAGCT-TGAAGAATATGAATTTACTGACAGAAC 297 consensus_163#1 TA---TTTAATCCTAAAAACATTCGATCTCTTATGCGTCACTAGTATCTATGCGAAAAAC 125 * ** * ** *** ** * * ** * * ** ** * *** consensus_163#0 AATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAG 357 consensus_163#1 AATTGCTGGATACAAGTTTAAACACGACTTATGGAGAAAATTGTAACGCAAATGAGCCAG 185 ************************************************************ consensus_163#0 CGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCG 417 consensus_163#1 CGACTACGCGTGAAAATGGCACTGATATTTTGCAAGAGGGGACATTCAGCCCTTTCAGCG 245 ************************************************************ consensus_163#0 GCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATT 477 consensus_163#1 GCAGTCTCGAGGACCTCGTTAACACCTTCGATGAGAAGATAACATCCTGCTTCCGCGATT 305 ************************************************************ consensus_163#0 ACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGA 537 consensus_163#1 ACGGCACGAACGTTGAATCCCTAGCACCCGTGCAAGTACGAACGCAAGAAGAAATTATGA 365 ************************************************************ consensus_163#0 ACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATT 597 consensus_163#1 ACGAATGTCAAATGTGGTGGACGATTACCGGTACGTTTGGTAACATATTACCAATCGATT 425 ************************************************************ consensus_163#0 G----------------------------------------------------------- 598 consensus_163#1 GGAGTAAATCGTATGCTAGGAAAATGCATATGCCTGCGCTTAATTTGAACGAAGCTCCGG 485 * consensus_163#0 ------------------------------------------------------------ consensus_163#1 TTTCGCAGGAAAGACCTGAACTAGAGGATTTAAGTAGCGAAGATGAGGCTGTTGCAACTG 545 consensus_163#0 ----------------------------------------------- consensus_163#1 ATTTGGACATGCATGCTTTGATCTTGTCCAGTAGCACCGATACTCAT 592 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |