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Apis mellifera
cluster # 166 cluster # 166       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_166#0 length = 742 sequences # 5  
consensus_166#1 length = 534 sequences # 1  

consensusID : consensus_166#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 742
fasta sequence
                              [CGAAACGAGAGTTCGCGCGTATCGAGTATCTATTCACGCTCGTGTAGATTCACGCGATTCATATTCACAGATCAGAATT--------GAATATAATATTCGATATACCTGCCAAGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCAAGATCCTCGTTCTTGATCTCTCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCACCGTATCTCTCTTGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTGGCCGTACGAATAACACCGCGCCGAACAGTAGACTGAGGCTGTAACCGAAGGGCACTTGACACCAGGCCAATCCTTTGGTAAACATCAATTCAGCGGTCCCGTTTATGTAGGCGCCACCGACCCACGTGGCGATCAAAGTGAAGACGCCAAGAATCGGACCTAAGCCACGGTTAGCAAGTATCAAAGCGTCATGGCCATGGCGGGAT]

[+] EMBL BI508323             [CGAAACGAGAGTTCGCGCGTATCGAGTATCTATTCACGCTCGTGTAGATTCACGCGATTCATATTCACAGATCAGAATT        GAATATAATATTCGATATACCTGCCAAGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCAAGATCCTCGTTCTTGATCTCTCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCACCGTATCTCTCTTGAAAAGGATCCAGCAT                                                                                                                                                                                                                                        ]
[+] EMBL BI507950             [               CGCGTATCGAGTATCTATTCACGCTCGTGTAGATTCACGCGATTCGTATTCACAAATCAGAATTATCTTGACGAATATAATATTCGATATACCTGCCAGGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCGAGATCCTCGTTCTTGATCTCCCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCGGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCACCGTATCTCTCTTGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTG                                                                                                                                                                                                              ]
[+] EMBL BI503332             [                                                   ACGCGATTCATATTCACAGATCAGAATT        GAATATAATATTCGATATACCTGCCAAGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCAAGATCCTCGTTCTTGATCTCTCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCGCCGTATCTCTCTTGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTGGCCGTACGAATAACAC                                                                                                                                                                                              ]
[+] EMBL BI508286             [                                                        ATTCATATTCACAGATCAGAATT        GAATATAATATTCGATATACCTGCCAAGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCAAGATCCTCGTTCTTGATCTCTCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCACCGTATCTCTCTTGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTGGCCGTACGAATAACAC                                                                                                                                                                                              ]
[+] EMBL BI506529             [                                                                                                                                                                                                                                                                                                                                                                       GACTATGCTGATGTCCGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCACCGTATCTCTCTTGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTGGCCGTACGAATAACACCGCGCCGAACAGTAGACTGAGGCTGTAACCGAAGGGCACTTGACACCAGGCCAATCCTTTGGTAAACATCAATTCAGCGGTCCCGTTTATGTAGGCGCCACCGACCCACGTGGCGATCAAAGTGAAGACGCCAAGAATCGGACCTAAGCCACGGTTAGCAAGTATCAAAGCGTCATGGCCATGGCGGGAT]


>consensus_166#0 CGAAACGAGAGTTCGCGCGTATCGAGTATCTATTCACGCTCGTGTAGATTCACGCGATTC ATATTCACAGATCAGAATTGAATATAATATTCGATATACCTGCCAAGGTATACCGCCAAA TACCAACAACAGCATGCAATCCACCCACTCGCCAAGATCCTCGTTCTTGATCTCTCCGAG CCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGG CGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGAC GGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCT GATGTCCGGATTCACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCC GCCACACCAGAACAGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGC ACCGTATCTCTCTTGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTGGCCG TACGAATAACACCGCGCCGAACAGTAGACTGAGGCTGTAACCGAAGGGCACTTGACACCA GGCCAATCCTTTGGTAAACATCAATTCAGCGGTCCCGTTTATGTAGGCGCCACCGACCCA CGTGGCGATCAAAGTGAAGACGCCAAGAATCGGACCTAAGCCACGGTTAGCAAGTATCAA AGCGTCATGGCCATGGCGGGAT



consensusID : consensus_166#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence
                              [TGCCGCGGAAATAGCGCCCAGACCGACAAAGGAGACCCACTGCGGTGTCAAGTATCGGAGAACGATCGGTAATGCTGCATTCGCTTCGTGCGTTATTATACTTTTGTTAAATCCCTGCACGGTTGACCAATCGGTGGCACGTGCCACCACGCCAATTAGAGCTGATGGAAACGCGAGGATCATGCAACCGAACATCGATGTTATCGACAAAGCGGTCGCCATCGATGTGCTTCGCATACTTAGGATCCTTTGAAAGTAGCCCTGCCAGGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCGAGATCCTCGTTCTTGATCTCCCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATT]

[+] EMBL BI503188             [TGCCGCGGAAATAGCGCCCAGACCGACAAAGGAGACCCACTGCGGTGTCAAGTATCGGAGAACGATCGGTAATGCTGCATTCGCTTCGTGCGTTATTATACTTTTGTTAAATCCCTGCACGGTTGACCAATCGGTGGCACGTGCCACCACGCCAATTAGAGCTGATGGAAACGCGAGGATCATGCAACCGAACATCGATGTTATCGACAAAGCGGTCGCCATCGATGTGCTTCGCATACTTAGGATCCTTTGAAAGTAGCCCTGCCAGGGTATACCGCCAAATACCAACAACAGCATGCAATCCACCCACTCGCCGAGATCCTCGTTCTTGATCTCCCCGAGCCATTCGTGCGGCGTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATT]


>consensus_166#1 TGCCGCGGAAATAGCGCCCAGACCGACAAAGGAGACCCACTGCGGTGTCAAGTATCGGAG AACGATCGGTAATGCTGCATTCGCTTCGTGCGTTATTATACTTTTGTTAAATCCCTGCAC GGTTGACCAATCGGTGGCACGTGCCACCACGCCAATTAGAGCTGATGGAAACGCGAGGAT CATGCAACCGAACATCGATGTTATCGACAAAGCGGTCGCCATCGATGTGCTTCGCATACT TAGGATCCTTTGAAAGTAGCCCTGCCAGGGTATACCGCCAAATACCAACAACAGCATGCA ATCCACCCACTCGCCGAGATCCTCGTTCTTGATCTCCCCGAGCCATTCGTGCGGCGTTAG ATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCCAACCC GATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCACCGAA CACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_166#0      ------------------------------------------------------------
consensus_166#1      TGCCGCGGAAATAGCGCCCAGACCGACAAAGGAGACCCACTGCGGTGTCAAGTATCGGAG 60
                                                                                 

consensus_166#0      ------------------------------------------------------------
consensus_166#1      AACGATCGGTAATGCTGCATTCGCTTCGTGCGTTATTATACTTTTGTTAAATCCCTGCAC 120
                                                                                 

consensus_166#0      ----------------------------------------------CGAAACGAGAGT-T 13
consensus_166#1      GGTTGACCAATCGGTGGCACGTGCCACCACGCCAATTAGAGCTGATGGAAACGCGAGGAT 180
                                                                    ****** ***  *

consensus_166#0      CGCGCGTATCGAGTATCTATTCACGCTCGTGTAGATTCACGCGATTCATATTCACAGATC 73
consensus_166#1      CATGCA-ACCGAACATCGAT--GTTATCGACAAAGCGGTCGCCATCGATGTGCTTCG--C 235
                     *  **  * ***  *** **      ***   *      *** **  ** * *   *  *

consensus_166#0      AGAATTGAATATAATATTCGATATACCTGCCAAGGTATACCGCCAAATACCAACAACAGC 133
consensus_166#1      ATACTTAGGATCCTTTGAAAGTAGCCCTGCCAGGGTATACCGCCAAATACCAACAACAGC 295
                     * * **        *      **  ******* ***************************

consensus_166#0      ATGCAATCCACCCACTCGCCAAGATCCTCGTTCTTGATCTCTCCGAGCCATTCGTGCGGC 193
consensus_166#1      ATGCAATCCACCCACTCGCCGAGATCCTCGTTCTTGATCTCCCCGAGCCATTCGTGCGGC 355
                     ******************** ******************** ******************

consensus_166#0      GTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCC 253
consensus_166#1      GTTAGATTTTTCTCGAAGTTGACGGCGGGGTGGAGAACGGAAAATGGCGCGGCCAATCCC 415
                     ************************************************************

consensus_166#0      AACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCA 313
consensus_166#1      AACCCGATCACGATGCATGCCAGCTGCAACGCATCGGTGCACGCGACGGAGTAAAGCCCA 475
                     ************************************************************

consensus_166#0      CCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATTC 373
consensus_166#1      CCGAACACTGTGTATACGGCTGCCAAGAGGGCAGAGGCGACTATGCTGATGTCCGGATT- 534
                     *********************************************************** 

consensus_166#0      ACGCCAGCAACCACTGCCAACGAGCTTCCCAAAGCTCTCAACACGCCGCCACACCAGAAC 433
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      AGATCACTGAAGAGGGCAGGCAGGAACAAGAGACCCCCCACTCCGGCACCGTATCTCTCT 493
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      TGAAAAGGATCCAGCATGGTCACGTGCTCCGCTTTCCTCATTGGCCGTACGAATAACACC 553
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GCGCCGAACAGTAGACTGAGGCTGTAACCGAAGGGCACTTGACACCAGGCCAATCCTTTG 613
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GTAAACATCAATTCAGCGGTCCCGTTTATGTAGGCGCCACCGACCCACGTGGCGATCAAA 673
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      GTGAAGACGCCAAGAATCGGACCTAAGCCACGGTTAGCAAGTATCAAAGCGTCATGGCCA 733
consensus_166#1      ------------------------------------------------------------
                                                                                 

consensus_166#0      TGGCGGGAT 742
consensus_166#1      ---------
                              




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)