These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 980 fasta sequence [AAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGC-AAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTAAAAAAAAAAAAA] [+] EMBL AMAPID73 [AAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACTGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTTCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACTGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTTCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTAAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTAAAAAAAAAAAAA] [+] EMBL AF442148 [ TGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGTCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCC ] [+] EMBL BI514627 [ GCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGCCTTCGCCGTAAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTAAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTAAACCGGAAGCTAAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTG AACCGGAAGCTGAATCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGAT ] consensusID : consensus_170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [AGAATTGGTGTGGGTTGAATAACTATTGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGAAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAAAA] [+] EMBL AMAPID14 [AGAATTGGTGTGGGTTGAATAACTATTGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGAAAGCTGAACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAAAA] consensusID : consensus_170#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [GAAAAATATACAATCTATGATTTAAATAAAAATCACTTATTCTGCATTGATTAATTGTTAAGAAACGATTTCATTATTTATTTTCTTCTCTTTTGTTTTTATCCAGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGGTAAGATCAAAGACATATGTTTGAAAAAAAAATTATTTATAATTTGATAATTATTAAATATAGAATTTATAATTTAAATGGATTTAATTAAAAGATAAAAAATTCTTTTTATTCTAACATAATCAACATATGAATTAAGAAATACGGCGATAAATATTTAAATATTTATGAATTTTATTGAAGAATTAATAATATAATAGCATCCTGTAATTTCATATTAATTTTTATATATAGCGNNNTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGGTAAATATTTAAATATAAACTATTACAAATTTAAAAATATCATAATTTTTAACATTAAATTTTGTAATTTTTATTT] [-] EMBL BI509768 [GAAAAATATACAATCTATGATTTAAATAAAAATCACTTATTCTGCATTGATTAATTGTTAAGAAACGATTTCATTATTTATTTTCTTCTCTTTTGTTTTTATCCAGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTGCGGTAAGATCAAAGACATATGTTTGAAAAAAAAATTATTTATAATTTGATAATTATTAAATATAGAATTTATAATTTAAATGGATTTAATTAAAAGATAAAAAATTCTTTTTATTCTAACATAATCAACATATGAATTAAGAAATACGGCGATAAATATTTAAATATTTATGAATTTTATTGAAGAATTAATAATATAATAGCATCCTGTAATTTCATATTAATTTTTATATATAGCGNNNTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGGTAAATATTTAAATATAAACTATTACAAATTTAAAAATATCATAATTTTTAACATTAAATTTTGTAATTTTTATTT] consensusID : consensus_170#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [TAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAA] [+] EMBL AMAPID22 [TAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACCAACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGGCCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAATATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGATTTTATTATTATAAAATCTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_170#1 ------------------------------------------------------------ consensus_170#3 ------------------------------------------------------------ consensus_170#0 AAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTGTAGTCGCGGTATTTGGGAATACC 60 consensus_170#2 ------------------------------------------------------------ consensus_170#1 ------------------------------------------------------------ consensus_170#3 ------------------------------------------------------------ consensus_170#0 AACCTAGATCCGCCTACTCGACCTACGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAA 120 consensus_170#2 ------------------------------------------------------------ consensus_170#1 ------------------------------------------------------------ consensus_170#3 ------------------------------------------------------------ consensus_170#0 CCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGC 180 consensus_170#2 ------------------------------------------------------------ consensus_170#1 ------------------------------------------------------------ consensus_170#3 ------------------------------------------------------------ consensus_170#0 CGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCA 240 consensus_170#2 ----------------------------GAAAAATATACAATCTATGATTTAAATAAAAA 32 consensus_170#1 ---------------------------------------------AGAATTGGTGTGGGT 15 consensus_170#3 ------------------------------------------------------------ consensus_170#0 AGGCCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATAAT 300 consensus_170#2 TCACTTATTCTGCATTGATTAATTGTTAAGAAACGATTTCATTATTTATTTTCTTCTCTT 92 consensus_170#1 TGAATAAC-TATTGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTG 74 consensus_170#3 ---------------TAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTG 45 consensus_170#0 CGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCG-TCTTCGCCGTGAAGCTGA 359 consensus_170#2 TTGTTTTTATCCAGATAATCATGAAGAATTTTGCCTTAGCAATTCTTGTTGTTACCTTTG 152 * * **** * * ** * * * ** * * consensus_170#1 --TAGTCGCGGTATTTGGGAATA-----CCAACCTAGATCCGCCTACTC-GACC------ 120 consensus_170#3 --TAGTCGCGGTATTTGGGAATA-----CCAACCTAGATCCGCCTACTC-GACC------ 91 consensus_170#0 ACCGGAAGCTGAACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 419 consensus_170#2 --TAGTCGCGGTATTTGGGAATA-----CCAACCTAGATCCGCCTACTC-GACC------ 198 * ** * * ** **** *** ** ** * * ** **** consensus_170#1 TGCGCGCCTTCGCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGGCCAATATA 180 consensus_170#3 TACGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATA 151 consensus_170#0 TCCGCGCCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATA 479 consensus_170#2 --TGCGGTAAGATCAAAGACATATGTTTGAAAAAAAAATTATTTATAATTTGATAAT--- 253 *** * * * *** ** ***** * * * consensus_170#1 TATTCCACAACCAAGACCACCTCATCCGCGCCTTCGCCGTGAAGCTGAACCGAAAGCTGA 240 consensus_170#3 TATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGA 211 consensus_170#0 TATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGA 539 consensus_170#2 TATTAAATA-TAGAATTTATAATTTAAATGGATTTAATTAAAAGATAAAAAATTCTTTTT 312 **** * * * * * * ** *** * ** * consensus_170#1 ACCCGGCAATAATCGGCCAATATATATTCCACAACCAAGACCACCT-CATCCGCGTCTTC 299 consensus_170#3 ACCCGGCAATAATCGACCAGTATATATTCCACAACCAAGGCCACCT-CATCCGCGTCTTC 270 consensus_170#0 ACCCGGTAATAATCGGCCAGTATATATTCCACAACCAAGACCACCT-CATCCGCGTCTTC 598 consensus_170#2 ATTCTAACATAATCAAC--ATATGAATTA-AGAAATACGGCGATAAATATTTAAATATTT 369 * * ****** * *** *** * ** * * * * ** * ** consensus_170#1 GCCGTGAAGCTGAATCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAAC 359 consensus_170#3 GCCGTGAAGCTGAACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAAC 330 consensus_170#0 GCCGTGAAGCTAAACCGGAAGCTGAACCCGGCAATAATCGACCAGTATATATTCCACAAC 658 consensus_170#2 AT----GAATTTTATTGAAGAATTAATAATATAATAG-CATCCTGTA---ATTTCATATT 421 * * * * * * ** **** * ** *** *** ** * consensus_170#1 CGAGACCACCTCATCCGCGTCTTCGCCGTGAA------CCGGAAGCTGAACCCGGCAATA 413 consensus_170#3 CAAGGCCACCTCATCCGCGTCTTCGCCGTGAA------GC-------------------- 364 consensus_170#0 CAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCTGAACCGGAAGCTGAACCCGGTAATA 718 consensus_170#2 AATTTTTATATA--TAGCGNNNTCGCCGTGAA------GC-------------------- 453 * * *** ********** * consensus_170#1 ATCGGCCAGTATATATTCCACAACCGAGACCACCTCATCCGCGTCTTCGCCGTGAA---- 469 consensus_170#3 ----------------------------------------------------TGAA---- 368 consensus_170#0 ATCGGCCAGTATATATTCCACAACCAAGACCACCTCATCCGCGTCTTCGCCGTGAAGCAA 778 consensus_170#2 ----------------------------------------------------TAAA---- 457 * ** consensus_170#1 -CCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 528 consensus_170#3 -CCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 427 consensus_170#0 ACCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 838 consensus_170#2 -CCGGAAGCTGAACCCGGCAATAATCGGCCAGTATATATTCCACAACCAAGACCACCTCA 516 *********************************************************** consensus_170#1 TCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAAT 588 consensus_170#3 TCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATATCAAATATTTAATAAAAT 487 consensus_170#0 TCCGCGAATCTAATTTATGAAGAATATGAAGCACGTGAAATAACAAATATTTAATAAAAT 898 consensus_170#2 TCCGGTAAAT--ATTTA-----AATATAAACTA-------TTACAAAT--TTAA--AAAT 558 **** ** ***** ***** ** * * ***** **** **** consensus_170#1 ATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGAT 648 consensus_170#3 ATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGAT 547 consensus_170#0 ATTTTTATTCGATTCATTATAAAATATTGTATGTAATGCTAATTTTAAAATAAATTTGAT 958 consensus_170#2 ATCATAATT---TTTAACATTAAATTTTGTA----ATTTTTATTT--------------- 596 ** * *** ** * ** **** ***** ** * **** consensus_170#1 TTTATTATTATAAAATCTAAAAAAAAAAAAAAA 681 consensus_170#3 TTTATTATTATAAAATCTAAAAAAAAAAAAA-- 578 consensus_170#0 TTTATTATTAAAAAA---AAAAAAA-------- 980 consensus_170#2 --------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |