These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence [GCTGATCGTTCGAGAGAATTAGTGCGGGTCTCTGTCTGTTCGCCGGACATTATATTATTATTATTATAACGCGAAAGATATTTGAACGCGGCGCGCCGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGTGTGTGCGCGAAGCGGAGCGAGACTATAAAAACAGCGGAGAGATAACAAAAATGGGAGAGAGAGAGGAAGAAAGAAAAACGAGCGAGAGCGAGAGAGAGAGAATTTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTGCTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATTTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAATTGGAAATTGAAAAATGAAAAGGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGATCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTGGTTTAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAGCGTCCGATTCCGTNNNGAAATTGTAGAGGAAATTGTCCCCGTGTTCTTGTCCCGCGTTCTTTCGGTTCCGCGCGATCGACGATTCAG] [+] EMBL BI504070 [GCTGATCGTTCGAGAGAATTAGTGCGGGTCTCTGTCTGTTCGCCGGACATTATATTATTATTATTATAACGCGAAAGATATTTGAACGCGGCGCGCCGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCGTGTGTGTGTGCGCGAAGCGGAGCGAGACTATAAAAACAGCGGAGAGATAACAAAAATGGGAGAGAGAGAGGAAGAAAGAAAAACGAGCGAGAGCGAGAGAGAGAGAATTTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTGCTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATTTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGA ] [+] EMBL BI507685 [ TTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTGCTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATTTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTC ] [+] EMBL BI506872 [ TTTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGCGAGCCATTCCCTCGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAATTGGAAATTGAAAAATGAAAAGGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGATCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTGGTTTAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAGCGTCCGATTCCGTNNNGAAATTGTAGAGGAAATTGTCCCCGTGTTCTTGTCCCGCGTTCTTTCGGTTCCGCGCGATCGACGATTCAG] [-] EMBL BI508549 [ tttTTTTTGGTTTTGTGTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATTCCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAATTGGAAATTGAAAAATGAAAAAGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGATCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTGGTTT ] consensusID : consensus_173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 456 fasta sequence [CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAATGTGCAAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGAGCGTTTTCGAAAGTCACCGCGAGAGAATCGTACCAAAAAATGATTGAAGAAAAGAAAAGGAAAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTGCGTCGATTATAAGATCATATATAGTACAAAGTAAACATATATTATTGTAATAACGGTTTAATTAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAGAGCGCGCGCGCGAGAGAGAGAGAGAGAGAGCGTCGCTGTTTTCACAACACACGTGTGAGAAACGTTGCGCTGAAATCGTGATACACGTTTGATTCTCCGGGTTTCGATGAATAT] [+] EMBL BI507910 [CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAATGTGCAAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGATCGTTTTCGAAAGTCACCGCGAGAGAATCGTACCAAAAAATGATTGAAGAAAAGAAAAGGAAAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTGCGTCGATTATAAGATCATATATAGTACAAAGTAAACATATATTATTGTAATAACGGTTTAATTAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAGAGCGCGCGCGCGAGAGAGAGAGAGAGAGAGCGTCGCTGTTTTCACAACACACGTGTGAGAAACGTTGCGCTGAAATCGTGATACACGTTTGATTCTCCGGGTTTCGATGAATAT] [+] EMBL BI516368 [CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAATGTGCAAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGAGCGTTTTCGAAAGTCACCGCGAGAGAATCGTACCAAAAAATGATTGAAGAAAAGAAAAGGAAAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTGCGTCGATTATAAGATCATATATAGTACAAAGTAAACATATATTATTGTAATAACGGTTTAATTAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAGAGCGCGCGCGCGAGAGAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_173#0 ---GCTGATCGTTCGAGAGAATTAGTG--CGGGTCTCTGTCTGTTCGCCGGACATTATAT 55 consensus_173#1 CGTTCTTTCGGTTCCGCGCGATCGACGATTCAGTTTCTCTCTGGCTAACGAA---TGTGC 57 ** **** ** * ** *** **** ** * * * consensus_173#0 TATTATTATTATAACGCGAAAGATATTTGAACGCGGCGCGCCGAGCGTGTGTGTGTGTGT 115 consensus_173#1 AAACTTTGGCATGCAACGAGAAAAACGAGAAAAGGATGGATGGATGGAATAGGGTCGAGC 117 * ** ** *** * * * *** * * ** * * * * * consensus_173#0 GTGTGTGTGTGTGTTTGTGCGTGTGTGTGTGCGCGAAGCGGAGCGAGACTATAAAAACAG 175 consensus_173#1 GTTTTCGAAAGTCACCGCGAGAGAAT-CGTACCAAAAAATGATTGAAGAAAAGAAAAGGA 176 ** * * ** * * * * * ** * ** ** ** * **** consensus_173#0 CGGAGAGATAACAAAAATG--GGAGAGAGAGAGGAAGAAAGAAAAACGAGCGAGAGCGAG 233 consensus_173#1 AAAAAAAATAATAATAACGATGATGATGATGATGATGAGAAGGAGAAAAACGGAAGCGTG 236 * * **** ** ** * * ** ** ** ** * * * * ** **** * consensus_173#0 AGAGAGAGAATTTGAAGTTTAGTATTATACCGCACTCGAAGTATCGTACCGCAATTCGTG 293 consensus_173#1 CGTC---GATTATAAGATCATATATAGTAC-AAAGTAAACATATATTATTGTAATA---A 289 * ** * * * * *** *** * * * *** ** * *** consensus_173#0 CTGTGCTATTGTACATATTAAAGAAAGAGAGAGAGAGAGAGAGAGGAGGCGGTGATGATT 353 consensus_173#1 CGGTTTAAT--TAACTATAAGGGAGAGAGAGAGAGGGAGAGAAAGGAAGAGAGAG----- 342 * ** ** ** *** * ** ********** ****** **** * * consensus_173#0 TTGGCAAAGATGGAGGAAAGAGGAGGAGAGTAGTTTTCGCGTTTTCGCTCGATTGCACGC 413 consensus_173#1 --AGCGCGCGCGCGAGAGAGAGAGAGAGAG-AGCGTCGCTGTTTTCAC---AACACACGT 396 ** * ** **** ***** ** * ****** * * **** consensus_173#0 GAGCCATTCCCT-CGCCGAACAACACATTCGTTTGCGATCGAGGACGTATTTGGTTTGGT 472 consensus_173#1 GTGAGAAACGTTGCGCTGAAATCGTGATACACGTTTGATTCTC--CGGGTTTCGATGAAT 454 * * * * * *** *** ** * * *** ** *** * * * consensus_173#0 GTGTTACCGCGTGTTACGCTATTCGATTTGTGCGGATCGCATCGAGGCGGACGTTGCATT 532 consensus_173#1 AT---------------------------------------------------------- 456 * consensus_173#0 CCCTCGTTCCGATGTCGTCCAAGACTCTGGACGAGAGATTTTTTTTTTTTCTTTTTTAAT 592 consensus_173#1 ------------------------------------------------------------ consensus_173#0 TGGAAATTGAAAAATGAAAAGGGATGATGCAACGATCCTGTCCCCGTTGAGATTCAGAGA 652 consensus_173#1 ------------------------------------------------------------ consensus_173#0 TCGTGTAAAGGGAGCAGCGAATATAATTGTACTAGTCTAATGCTAAACTTAATTTCCTTG 712 consensus_173#1 ------------------------------------------------------------ consensus_173#0 GTTTAAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAGAAAAAGCGTCCGATTCCG 772 consensus_173#1 ------------------------------------------------------------ consensus_173#0 TNNNGAAATTGTAGAGGAAATTGTCCCCGTGTTCTTGTCCCGCGTTCTTTCGGTTCCGCG 832 consensus_173#1 ------------------------------------------------------------ consensus_173#0 CGATCGACGATTCAG 847 consensus_173#1 --------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |