cluster # 1756

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Apis mellifera
cluster # 1756 cluster # 1756 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1756#0 length = 383 sequences # 1

consensus_1756#1 length = 351 sequences # 1

consensusID : consensus_1756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAATAGAACCTGGTGATTCATGCCTTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTTGAAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATATTAATAATGGTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATAAAACACCAAAAAAATTTTTAAAACAAGAAAGTAGATTGGTGATGCCTAGTGTGCAAAGCCCAGCTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTTAGTTTGAAAGAGATACATCGACAACAA]

[+] EMBL BI505122             [GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAATAGAACCTGGTGATTCATGCCTTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTTGAAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATATTAATAATGGTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATAAAACACCAAAAAAATTTTTAAAACAAGAAAGTAGATTGGTGATGCCTAGTGTGCAAAGCCCAGCTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTTAGTTTGAAAGAGATACATCGACAACAA]




>consensus_1756#0
GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAATAGAACCTGGTGATTCATGCC
TTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTTG
AAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATATTA
ATAATGGTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATAAAA
CACCAAAAAAATTTTTAAAACAAGAAAGTAGATTGGTGATGCCTAGTGTGCAAAGCCCAG
CTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTTAGTT
TGAAAGAGATACATCGACAACAA

consensusID : consensus_1756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTTGTTGTATTAACACCTTGTAAATCTAAACTTCCAATTGGAGTCTTTTTTCGCTCCAACATCAGAATATTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTACGATGCCAAGCACCAAAACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGTTCAACTGCTACCGAAAGTTCACATGAAACATGCATTTGTAATCGACCTTCTAGTGGGGATTGCGATGGTACCTTATTAAGCGTGAATTGTTGTCGATGTATCTCTTTCAAACTAAAAATAACATAACCAGA]

[+] EMBL BI510185             [AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTTGTTGTATTAACACCTTGTAAATCTAAACTTCCAATTGGAGTCTTTTTTCGCTCCAACATCAGAATATTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTACGATGCCAAGCACCAAAACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGTTCAACTGCTACCGAAAGTTCACATGAAACATGCATTTGTAATCGACCTTCTAGTGGGGATTGCGATGGTACCTTATTAAGCGTGAATTGTTGTCGATGTATCTCTTTCAAACTAAAAATAACATAACCAGA]




>consensus_1756#1
AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTTGTTGTA
TTAACACCTTGTAAATCTAAACTTCCAATTGGAGTCTTTTTTCGCTCCAACATCAGAATA
TTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTACGATGCCAAGCACCAAA
ACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGTTCAACTGCTACCGAAAGTTC
ACATGAAACATGCATTTGTAATCGACCTTCTAGTGGGGATTGCGATGGTACCTTATTAAG
CGTGAATTGTTGTCGATGTATCTCTTTCAAACTAAAAATAACATAACCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1756#0      GACATTTAGAAGAAATAGTTGCTACACCAGTAGTTATAAT-AGAACCTGGTGATTCATGC 59
consensus_1756#1      ------AGTAAAAAGGTATTAGGACGCGCACAAATATCACGAGAAACTAATCCAACATTT 54
                               ** **    **   ** *    *  *** *  **** **  *    ***  

consensus_1756#0      CTTCGATTTCCATCAACATTAAAATTAAATGATTTATACAGTGATTTTAAAATTACTGTT 119
consensus_1756#1      GTTGTATTAACACC--TTGTAAATCTAAAC--TTCCAATTGGAGTCTT----TTTTCGCT 106
                       **  ***  ** *     ****  ****   **   *  *   * **    **   * *

consensus_1756#0      GAAATATATTCGTTGCAAACACAACCCGAAATGTTACCACATGAAATTAAATACCATAT- 178
consensus_1756#1      CCAACA---TCAGAATATTTCCAATATGATAAAGTAGAACCTTTAAGTAAACACCATCTA 163
                        ** *   **     *    ***   ** *   **  ** *  ** **** ***** * 

consensus_1756#0      TAATAATG-GTAATGGAAGTAGTATTAATAGTAATAATTGTAATAAAAAGTTAGCGAATA 237
consensus_1756#1      CGATGCCAAGCACCAAAACCAGATATATCTTCAAACATTGTAAGAAATCCTCTATGT-TC 222
                        **     * *    **  **   **     **  ******* ***   *    *  * 

consensus_1756#0      AAACACCAAAAAAATTTTTAAAACAAGAAA-GTAGATTGGTGATGCCTAGTGTGCAAAGC 296
consensus_1756#1      AACTGCTACCGAAAGTTC----ACATGAAACATGCATTTGTAAT----------CGACCT 268
                      **   * *   *** **     *** ****  *  *** ** **          * *   

consensus_1756#0      CCAGCTGGACCATCTGCTGTTAGATCTCCAGCTTTTCAACTATCTGGTTATGTTATTTTT 356
consensus_1756#1      TCTAGTGGGGATTGCGATGGTACCTTATTAAGCGTGAATTGTTGTCGATGTATCTCTTTC 328
                       *   ***    *  * ** **  *    *    *  *    * * * * * *   *** 

consensus_1756#0      AGTTTGAAAGAGATACATCGACAACAA 383
consensus_1756#1      AAACTAAAAATAACATAACCAGA---- 351
                      *   * ***   * * * * * *

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)