These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1831#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAATACTTACTTGTGTTTTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAATAAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCAGTCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTTCAACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTGCATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAACAGAATAATTAAAACTGTTAATAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCGCATTTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATTGTCAGGACATGTATTATTAATTTTAATATGCATTTTTTCATGAAAAAATGCTA] [+] EMBL BI516275 [ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAATACTTACTTGTGTTTTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAATAAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCAGTCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTTCAACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTGCATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAACAGAATAATTAAAACTGTTAATAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCGCATTTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATTGTCAGGACATGTATTATTAATTTTAATATGCATTTTTTCATGAAAAAATGCTA] consensusID : consensus_1831#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CTATTATACAATCACGAGTATAAAATCCATATGCATTATACTCGTATATATTACTAGCGCAAGTTTATAATTTATATAATATGAATTTGATAAAAAATAATATACATTTTACATATATTTCTTTTTTTTTTTTACAATATACATTCTTTTACACTTATATGAGAAATTGTAATGTAAATAAATTGATTCGATATATAACAGAAGCATGCACGTATAAACGTGTACTTTTCAATCGAATCACTAATTGATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAAATGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAATAATAAAAATTAATATTAAACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCATATTAAAATTAATAATACATGTCCTGAC] [+] EMBL BI511048 [CTATTATACAATCACGAGTATAAAATCCATATGCATTATACTCGTATATATTACTAGCGCAAGTTTATAATTTATATAATATGAATTTGATAAAAAATAATATACATTTTACATATATTTCTTTTTTTTTTTTACAATATACATTCTTTTACACTTATATGAGAAATTGTAATGTAAATAAATTGATTCGATATATAACAGAAGCATGCACGTATAAACGTGTACTTTTCAATCGAATCACTAATTGATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAAATGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAATAATAAAAATTAATATTAAACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCATATTAAAATTAATAATACATGTCCTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1831#0 ATGTTCATATTGGGTAATGGAAATAGCTGTCATGAGATATACATATTGGCTTACAGTAAT 60 consensus_1831#1 -----------------CTATTATA-CAATCACGAG-TATAAA-ATCCATATGCATTA-T 39 *** * *** *** **** * ** * ** ** * consensus_1831#0 ACTTACTTGTGTT-TTGGCATTATTACCTAGATTATTCTATAAAACTATAAAATCGACAA 119 consensus_1831#1 ACTCGTATATATTACTAGCGCAAGTTTATAATTTATATAATATGAATTTGATA---AAAA 96 *** * * ** * ** * * ** **** *** * * * * * * ** consensus_1831#0 TAAATCCAGATTTTATGCAAAGTGCTATGTTTAATGCATCCAAACCATCCAAAAGTGGCA 179 consensus_1831#1 ATAATATACATTTTACATATATTTCTTTTTTTTTTTTACAATATACATTC-----TTTTA 151 *** * ****** * * * ** * *** * * * *** * * * consensus_1831#0 GTCATAGACAACGAATCGCGGAAAGAAGAGAAAATAGTTTTATTGCAGGTTGGTCACGTT 239 consensus_1831#1 CACTTATATGAGAAATTGT-------AATGTAAATAAATTGATTCGATATATAACA---- 200 * ** * * *** * * * ***** ** *** * * ** consensus_1831#0 CAACGCAACATGCTACTATAAGAACGGGGACTAAGCACGATTCATTGACAACTATTGTTG 299 consensus_1831#1 ----GAAGCATGCACGTATAA--ACGTGTACT-------TTTCAATCGAATCACTAATTG 247 * * ***** ***** *** * *** **** * * * * *** consensus_1831#0 CATGACATATCCTGAAGAATCAAATAAGACTGTCAGCACGTTATAA-CAGAATAATTAAA 358 consensus_1831#1 ------ATATCGTAACTATTGGATTAAAAGTTTTGGTCCCTAAAAGTCACAGCCATCAAA 301 ***** * * * * * *** * * * * * * * * ** * ** *** consensus_1831#0 ACTGTTAA-TAGTGCTATTCTATTAAAATTATTGGAAAAAAGCGATGATGTCCTTTGCCG 417 consensus_1831#1 TGTAATAAACAGTAGTCTAGATTTAAGGCCACTCGATGAA--TAATAAAAATTAATATTA 359 * *** *** * * **** * * ** ** ** * * consensus_1831#0 CATTTCAATCTTCATTGTTCCTAAGAATTGTAAAAGTATT--GTCAGGACATGTATTATT 475 consensus_1831#1 AACAATAACTAACACAATTTCCATAAACTATAGCATTTTTTCATGAAAAAATGCAT-ATT 418 * ** ** ** * * ** * ** * * ** * * * *** ** *** consensus_1831#0 AATTTTAATA-TGCATTTTTTCATGAAAAAATGCTA 510 consensus_1831#1 AAAATTAATAATACATGTCCTGAC------------ 442 ** ****** * *** * * * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |