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Apis mellifera
cluster # 1894 cluster # 1894       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1894#0 length = 597 sequences # 1  
consensus_1894#1 length = 554 sequences # 1  

consensusID : consensus_1894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence
                              [ACATGAGCATTTTAAATACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTTGCAAGCATCGTTATGACCATCATATGAGATATAAGATCGTAACAGATTTATCTTCTCGTGTTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCTTAATCCTAATACTCAATTTTTAAAAGCAATGGAATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAGCAAATGTTTGGTTACCAGCTAGATCTATCGTAGAAGAAGCTGTTGCAAAACGCTTTGAAGTTGATCCTAGCGGAGAAATTATAGAATTATCACAGTGTGTACCATGGTTTCAGCATCTTTTTGCAATAGAAAAAGAACAAAATATAAAACCTTTATTGAAATATGTGATTTTTAAAGATGATACTTATAGAATTAGATGCGTACCTGTGAAGCCTGATAGTTTTATATGCAGGTTATTTTTACCAGAATCTTGGGAAGGTTTAAAAAATGAAGCTCTGGTAAATGTCTGCGGAATCGAAGGTGCTACTTTTGTACATTCTGGTCGATTTATTGGCGGAAATCGAATGAGAGAAGGAATATTAATGA]

[+] EMBL BI508093             [ACATGAGCATTTTAAATACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTTGCAAGCATCGTTATGACCATCATATGAGATATAAGATCGTAACAGATTTATCTTCTCGTGTTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCTTAATCCTAATACTCAATTTTTAAAAGCAATGGAATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAGCAAATGTTTGGTTACCAGCTAGATCTATCGTAGAAGAAGCTGTTGCAAAACGCTTTGAAGTTGATCCTAGCGGAGAAATTATAGAATTATCACAGTGTGTACCATGGTTTCAGCATCTTTTTGCAATAGAAAAAGAACAAAATATAAAACCTTTATTGAAATATGTGATTTTTAAAGATGATACTTATAGAATTAGATGCGTACCTGTGAAGCCTGATAGTTTTATATGCAGGTTATTTTTACCAGAATCTTGGGAAGGTTTAAAAAATGAAGCTCTGGTAAATGTCTGCGGAATCGAAGGTGCTACTTTTGTACATTCTGGTCGATTTATTGGCGGAAATCGAATGAGAGAAGGAATATTAATGA]


>consensus_1894#0 ACATGAGCATTTTAAATACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTT GCAAGCATCGTTATGACCATCATATGAGATATAAGATCGTAACAGATTTATCTTCTCGTG TTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCTTAATCCTAATACTCAATTTTTAA AAGCAATGGAATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAGCAAATGTTT GGTTACCAGCTAGATCTATCGTAGAAGAAGCTGTTGCAAAACGCTTTGAAGTTGATCCTA GCGGAGAAATTATAGAATTATCACAGTGTGTACCATGGTTTCAGCATCTTTTTGCAATAG AAAAAGAACAAAATATAAAACCTTTATTGAAATATGTGATTTTTAAAGATGATACTTATA GAATTAGATGCGTACCTGTGAAGCCTGATAGTTTTATATGCAGGTTATTTTTACCAGAAT CTTGGGAAGGTTTAAAAAATGAAGCTCTGGTAAATGTCTGCGGAATCGAAGGTGCTACTT TTGTACATTCTGGTCGATTTATTGGCGGAAATCGAATGAGAGAAGGAATATTAATGA



consensusID : consensus_1894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence
                              [TACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTTGCAAGCATCGTTATGACCATCATATGAGAGATTTTAATGAATCTGTAAGTACGATTATTAAGAAACCAGGTCATGATTGGAAAACAAAACTAAGTAGTGCTGGTTTAATATATTGTCATTTTGGTCATGAAATTATCAAGGAATTAGTTCCACAAGCAAGCGATGCTGACATAGAAATAATTTTTAAACATATTTATAATACATTCATTCAAGAAATTGATAGTATAGATAATGGAATTTCTATATGTAGTGAAAATACTAAATATCAGATCGTAACAGATTTATCTTCTCGTGTTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCTTAATCCTAATACTCAATTTTTAAAAGCAATGGAATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAGCAAATGTTTGGTTACCAGCTAGATCTATCGTAGAAGAAGCTGTTGCAAAACGCTTTGAAGTTGATCCTAGCGGAGAAATTATAGAATTATCACAGTGTGTACCAT]

[+] EMBL BI504717             [TACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTTGCAAGCATCGTTATGACCATCATATGAGAGATTTTAATGAATCTGTAAGTACGATTATTAAGAAACCAGGTCATGATTGGAAAACAAAACTAAGTAGTGCTGGTTTAATATATTGTCATTTTGGTCATGAAATTATCAAGGAATTAGTTCCACAAGCAAGCGATGCTGACATAGAAATAATTTTTAAACATATTTATAATACATTCATTCAAGAAATTGATAGTATAGATAATGGAATTTCTATATGTAGTGAAAATACTAAATATCAGATCGTAACAGATTTATCTTCTCGTGTTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCTTAATCCTAATACTCAATTTTTAAAAGCAATGGAATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAGCAAATGTTTGGTTACCAGCTAGATCTATCGTAGAAGAAGCTGTTGCAAAACGCTTTGAAGTTGATCCTAGCGGAGAAATTATAGAATTATCACAGTGTGTACCAT]


>consensus_1894#1 TACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTTGCAAGCATCGTTATGA CCATCATATGAGAGATTTTAATGAATCTGTAAGTACGATTATTAAGAAACCAGGTCATGA TTGGAAAACAAAACTAAGTAGTGCTGGTTTAATATATTGTCATTTTGGTCATGAAATTAT CAAGGAATTAGTTCCACAAGCAAGCGATGCTGACATAGAAATAATTTTTAAACATATTTA TAATACATTCATTCAAGAAATTGATAGTATAGATAATGGAATTTCTATATGTAGTGAAAA TACTAAATATCAGATCGTAACAGATTTATCTTCTCGTGTTAAGTTTTTAAATCCACCATG GAATAGCAAAGATCTTAATCCTAATACTCAATTTTTAAAAGCAATGGAATTAACTGGCCA AGATTTTGTCCAACATATAAATTATGCAGCAAATGTTTGGTTACCAGCTAGATCTATCGT AGAAGAAGCTGTTGCAAAACGCTTTGAAGTTGATCCTAGCGGAGAAATTATAGAATTATC ACAGTGTGTACCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1894#0      ACATGAGCATTTTAAATACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTT 60
consensus_1894#1      ----------------TACTTGTGATATTGTGGTCGATGTTGGTGAAGAATATAATCCTT 44
                                      ********************************************

consensus_1894#0      GCAAGCATCGTTATGACCATCATATGAGATATAAGATCGTAACAGATTTATCTTCTCG-- 118
consensus_1894#1      GCAAGCATCGTTATGACCATCATATGAGA-----GATTTTAATGAATCTGTAAGTACGAT 99
                      *****************************     ***  ***   ** * *     **  

consensus_1894#0      TGTTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCT-TAATCCTAATACTCAATTTT 177
consensus_1894#1      TATTAAGAAACCAGGTC-ATGATTGGAAAACAAAACTAAGTAGTGCTGGTTTAATATATT 158
                      * *****     *  ** *  ** * * * ****  *   ** * **  *     ** **

consensus_1894#0      TAAAAGCAATGGAATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAG-CAAAT 236
consensus_1894#1      GTCATTTTGGTCATGAAATTATCAAGGAATTAGTTCCACAAGCAAGCGATGCTGACATAG 218
                         *        *   ** *  * * ** ** ** * ***   **   **** * ** * 

consensus_1894#0      GTTTGGTTACCAGCTAGATCTATCGTAGA--------AGAAGCTGTTGCAAAACGCTTTG 288
consensus_1894#1      AAATAATTTTTAAACATATTTATAATACATTCATTCAAGAAATTGATAGTATAGATAATG 278
                         *  **   *   * ** ***  ** *        ****  ** *   * *     **

consensus_1894#0      AAGTTGATCCTAGCGGAGAAATTATAGAATTATCACAGTGTG-TACCATGGTTTCAGCAT 347
consensus_1894#1      GAATTTCTATATGTAGTGAAAATACTAAAT-ATCAGATCGTAACAGATTTATCTTCTCGT 337
                       * **  *    *  * **** **   *** **** *  **   *   *  * *   * *

consensus_1894#0      CTTTTTGCAATAGAAAAAGAACAAAATAT--AAAACCTTTATTGAAATATGTGATTTTTA 405
consensus_1894#1      GTTAAGTTTTTAAATCCACCATGGAATAGCAAAGATCTTAATCCTAATACTCAATTTTTA 397
                       **       ** *   *  *   ****   ** * *** **   ****    *******

consensus_1894#0      AAGATGATACTTATAGAATTAGATGCGTACCTGTGAAGCCTGATAGTTTTATATGCAGGT 465
consensus_1894#1      AAAGCAATGG--AATTAACTGGCCAAGATTTTGTCCAACATATAAATTATGCAGCAAATG 455
                      **    **    *   ** * *    *    ***  * * *   * ** *  *   *   

consensus_1894#0      TATTTTTACCAGAATCTTGGGAAGGTTTAAAAAATGAAGCTCTGGTAAATGTCTGCGGAA 525
consensus_1894#1      TTTGGTTACCAG---CTAG---ATCTATCGTAGAAGAAGCTGTTGCAAAACGCT------ 503
                      * *  *******   ** *   *  * *   * * ****** * * ***   **      

consensus_1894#0      TCGAAGGTGCTACTTTTGTACATTCTGGTCGATTTATTGGCGGAAATCGAATGAGAGAAG 585
consensus_1894#1      TTGAAGTTGATCCTAGCGGAGAAATTA-TAGAATTATCACAGTGTGTACCAT-------- 554
                      * **** ** * **   * * *   *  * ** ****    *    *   **        

consensus_1894#0      GAATATTAATGA 597
consensus_1894#1      ------------
                                  




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)