These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCTGACGGTGTCAGTGCCGAAGGTAGAGATTGTGGACGAGCACGGGGCAACGGCTGGTGACAAATTTTACAAAGCTGGGAGCACGATAGAATTGAAGTGTGTGGTCAGCAATATACCGCAACCTACCGGA] [+] EMBL BI508698 [ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCTGACGGTGTCAGTGCCGAAGGTAGAGATTGTGGACGAGCACGGGGCAACGGCTGGTGACAAATTTTACAAAGCTGGGAGCACGATAGAATTGAAGTGTGTGGTCAGCAATATACCGCAACCTACCGGA] consensusID : consensus_1941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTGGAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT] [+] EMBL BI504587 [AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTGGAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1941#0 ------------------ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTT 42 consensus_1941#1 AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTT 60 ****************************************** consensus_1941#0 CACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGT--------------------- 81 consensus_1941#1 CACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTG 120 *************************************** consensus_1941#0 -----------------------------------------------------ATACGAG 88 consensus_1941#1 GAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAG 180 ******* consensus_1941#0 GTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGAT 148 consensus_1941#1 GTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGAT 240 ************************************************************ consensus_1941#0 CCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAA 208 consensus_1941#1 CCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAA 300 ************************************************************ consensus_1941#0 AACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTG 268 consensus_1941#1 AACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTG 360 ************************************************************ consensus_1941#0 CTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAG 328 consensus_1941#1 CTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAG 420 ************************************************************ consensus_1941#0 CCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAG 388 consensus_1941#1 CCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAG 480 ************************************************************ consensus_1941#0 TGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCTGACGGTGTCAGTGCCG 448 consensus_1941#1 TGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT---------------- 524 ******************************************** consensus_1941#0 AAGGTAGAGATTGTGGACGAGCACGGGGCAACGGCTGGTGACAAATTTTACAAAGCTGGG 508 consensus_1941#1 ------------------------------------------------------------ consensus_1941#0 AGCACGATAGAATTGAAGTGTGTGGTCAGCAATATACCGCAACCTACCGGA 559 consensus_1941#1 --------------------------------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |