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Apis mellifera
cluster # 1941 cluster # 1941       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1941#0 length = 559 sequences # 1  
consensus_1941#1 length = 524 sequences # 1  

consensusID : consensus_1941#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence
                              [ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCTGACGGTGTCAGTGCCGAAGGTAGAGATTGTGGACGAGCACGGGGCAACGGCTGGTGACAAATTTTACAAAGCTGGGAGCACGATAGAATTGAAGTGTGTGGTCAGCAATATACCGCAACCTACCGGA]

[+] EMBL BI508698             [ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCTGACGGTGTCAGTGCCGAAGGTAGAGATTGTGGACGAGCACGGGGCAACGGCTGGTGACAAATTTTACAAAGCTGGGAGCACGATAGAATTGAAGTGTGTGGTCAGCAATATACCGCAACCTACCGGA]


>consensus_1941#0 ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTG TGTGCCGCCACCTCATTAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCAC TCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGC TCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGT GCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGA CTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGC GACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAG AACTGTCCATCTGACGGTGTCAGTGCCGAAGGTAGAGATTGTGGACGAGCACGGGGCAAC GGCTGGTGACAAATTTTACAAAGCTGGGAGCACGATAGAATTGAAGTGTGTGGTCAGCAA TATACCGCAACCTACCGGA



consensusID : consensus_1941#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence
                              [AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTGGAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT]

[+] EMBL BI504587             [AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTTCACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTGGAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAGGTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGATCCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAAAACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTGCTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAGCCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAGTGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT]


>consensus_1941#1 AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTT CACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTG GAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAG GTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGAT CCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAA AACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTG CTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAG CCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAG TGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1941#0      ------------------ATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTT 42
consensus_1941#1      AGTTGAGAATCGACTACGATGTTGAGTCGTCTTTCGGCCGTGGTGGCCTCCATTTTGGTT 60
                                        ******************************************

consensus_1941#0      CACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGT--------------------- 81
consensus_1941#1      CACCAGCTACACGTTTTGTGTGCCGCCACCTCATTAGGTGCTAAGCCGTTTCCTGGACTG 120
                      ***************************************                     

consensus_1941#0      -----------------------------------------------------ATACGAG 88
consensus_1941#1      GAAAACCTGCCTAGGTCGTTCTGGCATGAGCTCAGTTCGCCTTTTACCGAGGTATACGAG 180
                                                                           *******

consensus_1941#0      GTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGAT 148
consensus_1941#1      GTGGAAAGTTTCGCAACAGAAACGGGCGGCACTCCAGAACCGAGGCCCTTTTTCGAAGAT 240
                      ************************************************************

consensus_1941#0      CCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAA 208
consensus_1941#1      CCAGAGAGCAACATTACCGTGCAACTCGGTGCTCAAGTATACATGCACTGTAGAGTACAA 300
                      ************************************************************

consensus_1941#0      AACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTG 268
consensus_1941#1      AACTTGCAGGATACACTCAAGGTGTCCTGGGTGCGCAGACGTGGCGACGAGCTCCACTTG 360
                      ************************************************************

consensus_1941#0      CTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAG 328
consensus_1941#1      CTCACGATCGGCCTCGACACGTACGCGAGCGACTCGAGGTTCTCGCTCGCCTTGGAGAAG 420
                      ************************************************************

consensus_1941#0      CCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAG 388
consensus_1941#1      CCGAATGATTGGCGGCTGCTTTTAAGTTCGGCGACCGAACGAGACGGCGGTGTGTACGAG 480
                      ************************************************************

consensus_1941#0      TGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCTGACGGTGTCAGTGCCG 448
consensus_1941#1      TGTCAAGTCAGTGCTCATCCCCCATTAATCAGAACTGTCCATCT---------------- 524
                      ********************************************                

consensus_1941#0      AAGGTAGAGATTGTGGACGAGCACGGGGCAACGGCTGGTGACAAATTTTACAAAGCTGGG 508
consensus_1941#1      ------------------------------------------------------------
                                                                                  

consensus_1941#0      AGCACGATAGAATTGAAGTGTGTGGTCAGCAATATACCGCAACCTACCGGA 559
consensus_1941#1      ---------------------------------------------------
                                                                         




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)