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Apis mellifera
cluster # 197 cluster # 197       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_197#0 length = 860 sequences # 4  
consensus_197#1 length = 469 sequences # 1  
consensus_197#2 length = 467 sequences # 1  

consensusID : consensus_197#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 860
fasta sequence
                              [GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAATGTCGTGGGCCAGGATAGCC]

[+] EMBL BI505291             [GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCNNNCTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAA                                                                                                                                                                                                                                                                  ]
[+] EMBL BI505609             [                GCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI505074             [                                                                                                                                                                                                                                                                                                                                                                                      TTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGAGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAATGTCGTGGGCCAGGATAGCC]
[+] EMBL BI516851             [                                                                                                                                                                                                                                                                                                                                                                                      TTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGGAGAGCGAGCGAGCC                                                                  ]


>consensus_197#0 GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGAT CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT TGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCC AGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACA GTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGGTAA TGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTA ATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGT GCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGA GCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAA CCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAA AAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGT TCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAACGAG CGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGGTGG AGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGAAAA TGTCGTGGGCCAGGATAGCC



consensusID : consensus_197#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence
                              [GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA]

[+] EMBL BI509300             [GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAACGTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA]


>consensus_197#1 GAGGGACAGTTTCGATCAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTG ATATACATGAATTCTTTGTGTAGTTGAATTTGAAATGGCGTTTGATTCACCGCGCAAACG ACGCCTATCCAGTGCCAGTGACGCCTAGTGTGAGAAAGTTTGCAGTGATTCGCACACAAC GTACCGTACAGTAACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCA GAGAATCGCATGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGG GAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTG AACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCG AAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA



consensusID : consensus_197#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence
                              [TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC]

[+] EMBL BI505559             [TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC]


>consensus_197#2 TTTATCGGGTCGCCAGGATGCAGCGCGAACGCAATCACTGCTTCGTTAGCTTCGATCCTT ACTGTCCGATACGCCTCGACAATTTCCTATTGCCTCCAGGCGAGCGAGGGACACGCAGGC CGATCGATCGCTTTTCCACTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAA CATTTGGAAAATGATGATCGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTC CGAACGAGATCGGATCCGGGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGA GACGACGCAAACTGACGTGAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGT GGCGCTGCACGCAGAAGCGAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACG GCGGACCATCCTGTCGCGTGTTCTTCTCGTGGTTGGTGTGCGTGCCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_197#0      GCAGGATCGCAACAGTGCTCCCTACTGCTCGTCCCGAGGCATCGGAGGGACAGTTTCGAT 60
consensus_197#1      --------------------------------------------GAGGGACAGTTTCGAT 16
consensus_197#2      ------------------------------------------------------------
                                                                                 

consensus_197#0      CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT 120
consensus_197#1      CAGGTCTTTTCGTGGTTAATCGCGATTAGATCCATCGTTTTGTGATATACATGAATTCTT 76
consensus_197#2      ---------------------TTTATCGGGTC-GCCAGGATGCAGCGCGAACGCAATCAC 38
                                             **  * **   *    **        * * * **  

consensus_197#0      TGTGTAGTTGAATTTGAAA--TGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTG 178
consensus_197#1      TGTGTAGTTGAATTTGAAA--TGGCGTTTGATTCACCGCGCAAACGACGCCTATCCAGTG 134
consensus_197#2      TGCTTCGTTAGCTTCGATCCTTACTGTCCGATACGCCTCGACAAT--TTCCTATTGCCTC 96
                     **  * ***   ** **    *   **  *** * ** **  **     *****    * 

consensus_197#0      CCAGTGACGCCTAGTGTGAGAAAGTTTG-CAGTGATTCGCACACAACGTACCGTACAGTA 237
consensus_197#1      CCAGTGACGCCTAGTGTGAGAAAGTTTG-CAGTGATTCGCACACAACGTACCGTACAGTA 193
consensus_197#2      CAGGCGA-GCGAGGGACACGCAGGCCGATCGATCGCTTTTCCACTA-ATCCCGTGC---- 150
                     *  * ** **   *     * * *     *  *   *    *** *  * **** *    

consensus_197#0      ACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATGG 297
consensus_197#1      ACAGTTACATTTTTCTTTTAGCTTAAACGAGGGATATACGAAATGCAGAGAATCGCATG- 252
consensus_197#2      ----CCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAAT-GATGATCGTGCG- 204
                            * **  **     * *  *       * **  * **    **  ****   * 

consensus_197#0      TAATGATCGGGTACGATTCGGGCGAGCGAGGGACACGCAGGCCGATCGATCGCTTTTCCA 357
consensus_197#1      ------------------------------------------------------------
consensus_197#2      ------------------------------------------------------------
                                                                                 

consensus_197#0      CTAATCCCGTGCCCCCCTTCCTCGAACGGATCGAGATGAAAACATTTGGAAAATGATGAT 417
consensus_197#1      ------------------------------------------------------------
consensus_197#2      ------------------------------------------------------------
                                                                                 

consensus_197#0      CGTGCGCCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 477
consensus_197#1      -------------TGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 299
consensus_197#2      ------CCAGTAGTGAGCATCCCCGTTCGGGTCGGACGTGTCCGAACGAGATCGGATCCG 258
                                  ***********************************************

consensus_197#0      GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 537
consensus_197#1      GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 359
consensus_197#2      GGAGCCGAACTTTCGCTTCGTTGGAACAATCTCGTGCCATGAGACGACGCAAACTGACGT 318
                     ************************************************************

consensus_197#0      GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 597
consensus_197#1      GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 419
consensus_197#2      GAACCATTCCCCCGTGGAGCACGGGCCCCACGTTTTAAACGTGGCGCTGCACGCAGAAGC 378
                     ************************************************************

consensus_197#0      GAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCATCCTGTCGCG 657
consensus_197#1      GAAAAAGCAGCGATGAACATTCGCGGTTGCCCGATTCGTACGGCGGACCA---------- 469
consensus_197#2      GAAAAAGCAGCGATGAACATTCGNNNTTGCCCGATTCGTACGGCGGACCATCCTGTCGCG 438
                     ***********************   ************************          

consensus_197#0      TGTTCTTCTCGTGGTTGGTGTGCGTGCCCGTGGCGAGTGGTCGTGTTCCGAGGGTGAAAC 717
consensus_197#1      ------------------------------------------------------------
consensus_197#2      TGTTCTTCTCGTGGTTGGTGTGCGTGCCC------------------------------- 467
                                                                                 

consensus_197#0      GAGCGCGATGAGAACACCGCCAAGNGTAACGAGGATGGACGAATTCGTGAAATAGCCCGG 777
consensus_197#1      ------------------------------------------------------------
consensus_197#2      ------------------------------------------------------------
                                                                                 

consensus_197#0      TGGAGAGCGAGCGAGCCACGCCACGCCACACCGCGCTTCACAGCTGCAGCTGCAAAACGA 837
consensus_197#1      ------------------------------------------------------------
consensus_197#2      ------------------------------------------------------------
                                                                                 

consensus_197#0      AAATGTCGTGGGCCAGGATAGCC 860
consensus_197#1      -----------------------
consensus_197#2      -----------------------
                                            




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)